Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01840 - ( KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) outward rectifier potassium channel )
27 Proteins interacs with AT4G01840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G16150 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0830
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | ARAC10 GTP BINDING |
AT5G58640 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | SELENOPROTEIN-RELATED |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0078
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G47960 | PredictedReconstituted ComplexSynthetic Lethality | FSW = 0.3664
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G76810 | PredictedSynthetic Lethality | FSW = 0.0357
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G79020 | Predictedsynthetic growth defect | FSW = 0.0168
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G77950 | Predictedinterologs mapping | FSW = 0.0222
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G36170 | PredictedSynthetic LethalityCo-purification | FSW = 0.1346
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G09060 | PredictedAffinity Capture-MS | FSW = 0.0505
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT3G60510 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G64880 | PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G43790 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0145
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G53030 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G10310 | Predictedinterologs mappingSynthetic RescuePhenotypic Enhancement | FSW = 0.0528
| Unknown | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT4G30480 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G17860 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G22840 | PredictedSynthetic Rescue | FSW = 0.0303
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G24840 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0168
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G44740 | PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT1G07710 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454