Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01850 - ( SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) copper ion binding / methionine adenosyltransferase )

23 Proteins interacs with AT4G01850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02500

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0508

Class C:

nucleus

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT2G36880

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2000

Class C:

nucleus

MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G17390

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

FSW = 0.1964

Class C:

nucleus

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT4G13980

Predicted

biochemical

FSW = 0.0114

Class C:

nucleus

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT4G34390

Predicted

two hybrid

FSW = 0.0417

Class C:

nucleus

XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G45300

Predicted

Synthetic Rescue

FSW = 0.0120

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G49030

Predicted

Synthetic Rescue

FSW = 0.0802

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G04720

Predicted

Synthetic Rescue

FSW = 0.0150

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G47700

Predicted

two hybrid

synthetic growth defect

FSW = 0.0544

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT5G60620

Predicted

two hybrid

FSW = 0.1078

Unknown

PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN
AT5G44290

Predicted

Affinity Capture-Western

Reconstituted Complex

biochemical

FSW = 0.0356

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G19140

Predicted

biochemical

Affinity Capture-Western

FSW = 0.0684

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK)
AT3G10370

Predicted

two hybrid

FSW = 0.0766

Unknown

SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT3G28730

Predicted

Synthetic Rescue

FSW = 0.0070

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0164

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G09900

Predicted

two hybrid

FSW = 0.0486

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G42400

Predicted

Phenotypic Suppression

FSW = 0.0580

Unknown

SDG25 (SET DOMAIN PROTEIN 25)
AT5G20030

Predicted

two hybrid

FSW = 0.0368

Unknown

AGENET DOMAIN-CONTAINING PROTEIN
AT5G26360

Predicted

two hybrid

FSW = 0.1000

Unknown

CHAPERONIN PUTATIVE
AT4G00560

Predicted

Affinity Capture-Western

FSW = 0.1905

Unknown

METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED
AT3G62760

Predicted

Phenotypic Enhancement

FSW = 0.0267

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0078

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G24510

Predicted

synthetic growth defect

FSW = 0.0766

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454