Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01850 - ( SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) copper ion binding / methionine adenosyltransferase )
23 Proteins interacs with AT4G01850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02500 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0508
| Class C:nucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT2G36880 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2000
| Class C:nucleus | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.1964
| Class C:nucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT4G13980 | Predictedbiochemical | FSW = 0.0114
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT4G34390 | Predictedtwo hybrid | FSW = 0.0417
| Class C:nucleus | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G45300 | PredictedSynthetic Rescue | FSW = 0.0120
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G49030 | PredictedSynthetic Rescue | FSW = 0.0802
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G04720 | PredictedSynthetic Rescue | FSW = 0.0150
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G47700 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0544
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT5G60620 | Predictedtwo hybrid | FSW = 0.1078
| Unknown | PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN |
AT5G44290 | PredictedAffinity Capture-WesternReconstituted Complexbiochemical | FSW = 0.0356
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G19140 | PredictedbiochemicalAffinity Capture-Western | FSW = 0.0684
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT3G10370 | Predictedtwo hybrid | FSW = 0.0766
| Unknown | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT3G28730 | PredictedSynthetic Rescue | FSW = 0.0070
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0164
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G09900 | Predictedtwo hybrid | FSW = 0.0486
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G42400 | PredictedPhenotypic Suppression | FSW = 0.0580
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT5G26360 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | CHAPERONIN PUTATIVE |
AT4G00560 | PredictedAffinity Capture-Western | FSW = 0.1905
| Unknown | METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED |
AT3G62760 | PredictedPhenotypic Enhancement | FSW = 0.0267
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G24510 | Predictedsynthetic growth defect | FSW = 0.0766
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454