Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02020 - ( SWN (SWINGER) transcription factor )
27 Proteins interacs with AT4G02020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0037
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G35670 | Experimentaltwo hybridcoimmunoprecipitation | FSW = 0.0276
| Class D:nucleus (p = 0.78) | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT3G20740 | Experimentalinteraction detection method | FSW = 0.2924
| Unknown | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT5G51230 | Experimental | FSW = 0.1452
| Class D:nucleus (p = 0.78) | EMF2 (EMBRYONIC FLOWER 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G16845 | ExperimentalcoimmunoprecipitationAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0994
| Class D:nucleus (p = 0.78) | VRN2 (REDUCED VERNALIZATION RESPONSE 2) TRANSCRIPTION FACTOR |
AT5G58230 | Predictedco-fractionationCo-fractionationReconstituted ComplexAffinity Capture-Western | FSW = 0.0632
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT4G32830 | PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19310 | PredictedPhenotypic Enhancement | FSW = 0.0560
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G79020 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0286
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G38130 | PredictedAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-WesternCo-fractionationReconstituted ComplexAffinity Capture-MS | FSW = 0.0577
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G25170 | PredictedPhenotypic Suppression | FSW = 0.1452
| Unknown | PKL (PICKLE) ATPASE/ DNA BINDING / DNA HELICASE |
AT5G04240 | PredictedPhenotypic Suppression | FSW = 0.1021
| Unknown | ELF6 (EARLY FLOWERING 6) TRANSCRIPTION FACTOR |
AT3G17590 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0773
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT3G18480 | PredictedPhenotypic Suppression | FSW = 0.0149
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT1G03770 | PredictedPhenotypic Suppression | FSW = 0.1161
| Unknown | RING1B (RING 1B) PROTEIN BINDING / ZINC ION BINDING |
AT1G51450 | PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT1G55325 | PredictedPhenotypic Suppression | FSW = 0.0762
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAP240 (INTERPROIPR009401) HAS 190 BLAST HITS TO 182 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 45 METAZOA - 113 FUNGI - 3 PLANTS - 23 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT3G23060 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.4000
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G74150 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
AT3G61740 | PredictedPhenotypic Enhancement | FSW = 0.1288
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G36870 | PredictedPhenotypic Suppression | FSW = 0.0242
| Unknown | BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G42400 | PredictedPhenotypic Enhancement | FSW = 0.3509
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT5G44280 | PredictedPhenotypic Suppression | FSW = 0.1021
| Unknown | RING1A (RING 1A) PROTEIN BINDING / ZINC ION BINDING |
AT5G46250 | PredictedPhenotypic Enhancement | FSW = 0.3292
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G59160 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0385
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G22275 | PredictedGene fusion method | FSW = 0.0275
| Unknown | ZYP1B |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454