Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02195 - ( SYP42 (SYNTAXIN OF PLANTS 42) SNAP receptor )

7 Proteins interacs with AT4G02195
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G55800

Experimental

FSW = 0.0937

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

SBPASE (SEDOHEPTULOSE-BISPHOSPHATASE) PHOSPHORIC ESTER HYDROLASE/ SEDOHEPTULOSE-BISPHOSPHATASE
AT1G26670

Experimental

coimmunoprecipitation

FSW = 0.3956

Class D:

nucleus (p = 0.78)

VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT5G26980

Experimental

Affinity Capture-Western

FSW = 0.4215

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT1G28490

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.2286

Unknown

SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT1G77140

Experimental

electron microscopy

pull down

coimmunoprecipitation

FSW = 0.2286

Class D:

mitochondrion (p = 0.82)

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT5G39510

Predicted

in vivo

Enriched domain pair

Co-expression

FSW = 0.2106

Unknown

SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT5G35590

Predicted

two hybrid

FSW = 0.0779

Unknown

PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454