Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02260 - ( RSH1 (RELA-SPOT HOMOLOG 1) catalytic )

38 Proteins interacs with AT4G02260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G17860

Experimental

FSW = 0.0279

Unknown

 JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)
AT5G41790

Predicted

pull down

FSW = 0.4083

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G33800

Predicted

pull down

FSW = 0.4248

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G34620

Predicted

pull down

FSW = 0.2845

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G17170

Predicted

pull down

FSW = 0.1032

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G44890

Predicted

pull down

FSW = 0.1646

Class C:

plastid

 RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G30510

Predicted

pull down

FSW = 0.2455

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G48350

Predicted

pull down

FSW = 0.2368

Class C:

plastid

 RIBOSOMAL PROTEIN L18 FAMILY PROTEIN
AT3G13120

Predicted

pull down

FSW = 0.0888

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT3G27850

Predicted

pull down

FSW = 0.0324

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G24240

Predicted

pull down

FSW = 0.0926

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G78630

Predicted

pull down

FSW = 0.2482

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33450

Predicted

pull down

FSW = 0.0865

Class C:

plastid

 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
AT2G43030

Predicted

pull down

FSW = 0.0808

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
ATCG00160Predicted

pull down

FSW = 0.1323

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

pull down

FSW = 0.3522

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00330Predicted

pull down

FSW = 0.1253

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S14
ATCG00380Predicted

pull down

FSW = 0.2190

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00750Predicted

pull down

FSW = 0.0824

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S11
ATCG00770Predicted

pull down

FSW = 0.1263

Class C:

plastid

 CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
ATCG00800Predicted

pull down

FSW = 0.2252

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

pull down

FSW = 0.1164

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

pull down

FSW = 0.2386

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

pull down

FSW = 0.2526

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT4G02930

Predicted

pull down

FSW = 0.0501

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

pull down

FSW = 0.1433

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G65290

Predicted

pull down

FSW = 0.2148

Unknown

 MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT1G32490

Predicted

pull down

FSW = 0.3025

Unknown

 ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G20060

Predicted

pull down

FSW = 0.2970

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G22310

Predicted

pull down

FSW = 0.6441

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT3G49080

Predicted

pull down

FSW = 0.2790

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G51140

Predicted

pull down

FSW = 0.6325

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G15390

Predicted

pull down

FSW = 0.0744

Unknown

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT5G23535

Predicted

pull down

FSW = 0.1103

Unknown

 KOW DOMAIN-CONTAINING PROTEIN
AT5G64650

Predicted

pull down

FSW = 0.3233

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT5G64670

Predicted

pull down

FSW = 0.1256

Unknown

 RIBOSOMAL PROTEIN L15 FAMILY PROTEIN
ATCG01230Predicted

pull down

FSW = 0.3068

Unknown

 CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT5G12100

Predicted

Gene fusion method

FSW = 0.0488

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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