Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02570 - ( ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) protein binding )
91 Proteins interacs with AT4G02570| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G75950
   | Experimentaltwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernprotein tri hybridAffinity Capture-Western | FSW = 0.2217
| Class D:cytosol (p = 0.67) | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G31340
| ExperimentalAffinity Capture-Western | FSW = 0.0228
| Class D:cytosol (p = 0.67) | RUB1 (RELATED TO UBIQUITIN 1) PROTEIN BINDING |
| AT2G02560
| Experimentalaffinity technologyAffinity Capture-WesternAffinity Capture-Westernpull downmolecular sievingAffinity Capture-Westerntwo hybridReconstituted Complextwo hybridaffinity technology | FSW = 0.0374
| Class D:cytosol (p = 0.67) | CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) BINDING |
| AT5G57360
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1610
| Class D:cytosol (p = 0.67) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G02440
| Experimentalprotein tri hybridfluorescence acceptor donor pairbioassayfluorescence acceptor donor pair | FSW = 0.1703
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE |
| AT5G15850
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0199
| Class D:plastid (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G47870
| ExperimentalReconstituted Complex | FSW = 0.0398
| Class D:plastid (p = 0.78) | ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
| AT1G20140
| Experimentalprotein tri hybridtwo hybrid | FSW = 0.2022
| Class D:cytosol (p = 0.67) | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G20180
| Experimentalpull down | FSW = 0.0111
| Unknown | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) DNA BINDING / PHYTOCHROME BINDING / TRANSCRIPTION FACTOR |
| AT2G25000
| Experimentalmolecular sieving | FSW = 0.0243
| Unknown | WRKY60 TRANSCRIPTION FACTOR |
| AT2G25490
| ExperimentalPhenotypic Enhancementpull downReconstituted Complex | FSW = 0.0457
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G23050
| ExperimentalReconstituted Complexpull downpull downpull downpull downReconstituted Complexin vitro | FSW = 0.0782
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | IAA7 (INDOLE-3-ACETIC ACID 7) TRANSCRIPTION FACTOR |
| AT5G42970
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0834
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
| AT1G30950
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1849
| Class D:plastid (p = 0.78) | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G20570
| Experimentaltwo hybridReconstituted ComplexAffinity Capture-Westernpull downpull downAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0712
| Class D:plastid (p = 0.78) | RBX1 (RING-BOX 1) PROTEIN BINDING |
| AT2G26990
| ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.0317
| Class D:cytosol (p = 0.67) | FUS12 (FUSCA 12) |
| AT5G25350
| Experimentalpull downPhenotypic EnhancementReconstituted Complex | FSW = 0.0580
| Unknown | EBF2 (EIN3-BINDING F BOX PROTEIN 2) PROTEIN BINDING |
| AT1G10940
| Experimentaltwo hybridtwo hybridAffinity Capture-Westerntwo hybridfluorescence acceptor donor pairaffinity technology | FSW = 0.0729
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
| AT1G64750
| Experimental | FSW = 0.0031
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT1G01640
| Experimentaltwo hybrid | FSW = 0.0632
| Unknown | SPECKLE-TYPE POZ PROTEIN-RELATED |
| AT5G42190
| Experimentaltwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.1628
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G01620
| Experimentaltwo hybrid | FSW = 0.1783
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
| AT4G05460
| Experimentaltwo hybrid | FSW = 0.1031
| Unknown | F-BOX FAMILY PROTEIN (FBL20) |
| AT4G08980
| Experimentaltwo hybrid | FSW = 0.1113
| Unknown | F-BOX FAMILY PROTEIN (FBW2) |
| AT3G26000
| Experimentaltwo hybrid | FSW = 0.1600
| Unknown | F-BOX FAMILY PROTEIN |
| AT2G39940
| ExperimentalAffinity Capture-WesternAffinity Capture-Westernmolecular sievingAffinity Capture-WesternReconstituted Complexcoimmunoprecipitation | FSW = 0.0944
| Unknown | COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G36800
| ExperimentalAffinity Capture-Western | FSW = 0.0191
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT4G03190
| Experimental | FSW = 0.0971
| Unknown | GRH1 (GRR1-LIKE PROTEIN 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G12820
| Experimental | FSW = 0.0371
| Unknown | AFB3 (AUXIN SIGNALING F-BOX 3) AUXIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G24210
| ExperimentalAffinity Capture-Western | FSW = 0.1219
| Unknown | SLY1 (SLEEPY1) |
| AT2G25700
| Experimentaltwo hybrid | FSW = 0.2121
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G21860
| Experimentaltwo hybrid | FSW = 0.1951
| Unknown | ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G34210
| Experimentalprotein tri hybridtwo hybrid | FSW = 0.2775
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G60010
| Experimentaltwo hybrid | FSW = 0.1997
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G25650
| Experimentaltwo hybrid | FSW = 0.2273
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G10230
| Experimentaltwo hybrid | FSW = 0.2003
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03160
| Experimentaltwo hybrid | FSW = 0.1768
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03190
| Experimentaltwo hybrid | FSW = 0.1894
| Unknown | ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03170
| Experimentalprotein tri hybridtwo hybrid | FSW = 0.2409
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G31470
| Experimental | FSW = 0.0226
| Unknown | F-BOX FAMILY PROTEIN |
| AT3G62980
| ExperimentalAffinity Capture-WesternAffinity Capture-Westernmolecular sievingAffinity Capture-Westerncoimmunoprecipitationaffinity technology | FSW = 0.1106
| Unknown | TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G35635 | ExperimentalAffinity Capture-Western | FSW = 0.0228
| Unknown | UBQ7 PROTEIN BINDING |
| AT1G77000
| ExperimentalAffinity Capture-Western | FSW = 0.0222
| Unknown | SKP2B UBIQUITIN-PROTEIN LIGASE |
| AT4G02740
| Experimentaltwo hybrid | FSW = 0.1604
| Unknown | CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G027602) HAS 1691 BLAST HITS TO 1200 PROTEINS IN 170 SPECIES ARCHAE - 2 BACTERIA - 109 METAZOA - 687 FUNGI - 197 PLANTS - 199 VIRUSES - 23 OTHER EUKARYOTES - 474 (SOURCE NCBI BLINK) |
| AT1G26830
| Experimentalco-fractionationCo-fractionation | FSW = 0.0894
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G42620
| ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0220
| Unknown | MAX2 (MORE AXILLARY BRANCHES 2) UBIQUITIN-PROTEIN LIGASE |
| AT1G21410
| Experimentalcoimmunoprecipitation | FSW = 0.0106
| Unknown | SKP2A |
| AT2G17360
| Predictedinterologs mapping | FSW = 0.0010
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT5G60640
| PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
| AT3G47520
| PredictedPhenotypic Enhancement | FSW = 0.0111
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT5G09590
| PredictedSynthetic Lethality | FSW = 0.0085
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT3G23990
| Predictedtwo hybrid | FSW = 0.0025
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
| AT2G01690
| PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0059
| Unknown | BINDING |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G65540
| PredictedPhenotypic Enhancement | FSW = 0.0059
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G16030
| PredictedPhenotypic Enhancement | FSW = 0.0223
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT1G35420
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT2G27290
| Predictedtwo hybrid | FSW = 0.0113
| Unknown | UNKNOWN PROTEIN |
| AT2G33340
| Predictedinterologs mapping | FSW = 0.0116
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G02980
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0745
| Unknown | CUL2 (CULLIN 2) UBIQUITIN PROTEIN LIGASE BINDING |
| AT5G45970
| Predictedtwo hybridAffinity Capture-MS | FSW = 0.0055
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT2G39480
| PredictedPhenotypic Enhancement | FSW = 0.0219
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G64230
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0113
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
| AT3G07260
| PredictedPhenotypic Suppression | FSW = 0.0358
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
| AT1G76300
| PredictedPhenotypic Enhancement | FSW = 0.0208
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT2G29570
| Predictedtwo hybrid | FSW = 0.0088
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
| AT1G61570
| PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT5G08380
| Predictedtwo hybrid | FSW = 0.0215
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G80830
| Predictedinterologs mapping | FSW = 0.0095
| Unknown | NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
| AT1G01910
| Predictedtwo hybrid | FSW = 0.0032
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
| AT2G17200
| Predictedtwo hybrid | FSW = 0.0180
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0186
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT4G08320
| Predictedtwo hybrid | FSW = 0.0128
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT5G26600
| Predictedtwo hybrid | FSW = 0.0113
| Unknown | CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
| AT3G57870
| Predictedtwo hybrid | FSW = 0.0088
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
| AT4G32660
| Predictedtwo hybrid | FSW = 0.0535
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G14180
| Predictedtwo hybrid | FSW = 0.0072
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
| AT5G19400
| Predictedtwo hybrid | FSW = 0.0382
| Unknown | SMG7 |
| AT5G55260
| Predictedtwo hybrid | FSW = 0.0196
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G54710
| PredictedAffinity Capture-Western | FSW = 0.0253
| Unknown | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT4G38020
| PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
| AT5G18940
| PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | MO25 FAMILY PROTEIN |
| AT1G34340
| PredictedPhenotypic Enhancement | FSW = 0.0346
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
| AT2G17560
| PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | HMGB4 (HIGH MOBILITY GROUP B 4) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT3G18660
| PredictedAffinity Capture-MS | FSW = 0.0022
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0022
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G32765
| PredictedPhenotypic Suppression | FSW = 0.0115
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
| AT3G43250
| Predictedinterologs mapping | FSW = 0.0253
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT3G49880
| PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT4G33200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0692
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
| AT5G46210
| PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0707
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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