Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02640 - ( BZO2H1 DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor )

17 Proteins interacs with AT4G02640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G20380

Experimental

protein complementation assay

two hybrid

bioassay

FSW = 0.2000

Class A:

nucleus

cytosol

Class D:

nucleus (p = 0.78)

 ZINC FINGER PROTEIN (LSD1)
AT4G34590

Experimental

two hybrid

FSW = 0.3363

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 GBF6 (G-BOX BINDING FACTOR 6) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT2G18160

Experimental

two hybrid

FSW = 0.5470

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT1G75390

Experimental

two hybrid

FSW = 0.4325

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 ATBZIP44 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 44) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G49450

Experimental

two hybrid

FSW = 0.7656

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G54620

Experimental

two hybrid

FSW = 0.6211

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 BZIP25 (BASIC LEUCINE ZIPPER 25) PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G24800

Experimental

two hybrid

FSW = 0.8750

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 BZIP9 (BASIC LEUCINE ZIPPER 9) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G62420

Experimental

two hybrid

two hybrid

interaction detection method

interaction detection method

protein complementation assay

fluorescence acceptor donor pair

FSW = 0.7792

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G28770

Experimental

two hybrid

FSW = 0.6000

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 BZO2H3 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G43810

Experimental

protein array

FSW = 0.0438

Class B:

plasma membrane

nucleus

cytosol

Class D:

nucleus (p = 0.78)

 CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Experimental

protein array

FSW = 0.0594

Class B:

plasma membrane

nucleus

cytosol

Class D:

nucleus (p = 0.78)

 CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT2G44690

Experimental

FSW = 0.0229

Class B:

plasma membrane

nucleus

cytosol

 ARAC9 GTP BINDING
AT3G24650

Experimental

interaction detection method

two hybrid

FSW = 0.1818

Class D:

nucleus (p = 0.78)

 ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT2G41090

Experimental

protein array

FSW = 0.0430

Unknown

 CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22)
AT4G14640

Experimental

protein array

FSW = 0.0637

Unknown

 CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT5G21274

Experimental

protein array

FSW = 0.0745

Unknown

 CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT3G51920

Experimental

protein array

FSW = 0.0805

Unknown

 CAM9 (CALMODULIN 9) CALCIUM ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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