Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02690 - ( glutamate binding )

13 Proteins interacs with AT4G02690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G66680

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT2G19080

Predicted

Affinity Capture-MS

FSW = 0.1324

Unknown

METAXIN-RELATED
AT3G52150

Predicted

two hybrid

FSW = 0.0250

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G13120

Predicted

Affinity Capture-MS

FSW = 0.1008

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT5G49945

Predicted

Affinity Capture-MS

FSW = 0.0462

Unknown

UNKNOWN PROTEIN
AT1G51740

Predicted

two hybrid

FSW = 0.0588

Unknown

SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING
AT3G16080

Predicted

two hybrid

FSW = 0.0625

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37C)
AT3G52120

Predicted

two hybrid

FSW = 0.1111

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT2G44530

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE
AT3G60240

Predicted

two hybrid

FSW = 0.0093

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G63310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1498

Unknown

GLUTAMATE BINDING
AT4G15470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5833

Unknown

EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0005 (INTERPROIPR006214) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLUTAMATE BINDING (TAIRAT1G030701) HAS 4000 BLAST HITS TO 3999 PROTEINS IN 955 SPECIES ARCHAE - 0 BACTERIA - 1775 METAZOA - 750 FUNGI - 92 PLANTS - 143 VIRUSES - 77 OTHER EUKARYOTES - 1163 (SOURCE NCBI BLINK)
AT4G14730Predicted

Phylogenetic profile method

FSW = 0.3951

Unknown

TRANSMEMBRANE PROTEIN-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454