Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02860 - ( catalytic )

11 Proteins interacs with AT4G02860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0082

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.1200

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.0976

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G15610

Predicted

two hybrid

FSW = 0.1131

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G24710

Predicted

two hybrid

FSW = 0.1111

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT1G22240

Predicted

Affinity Capture-MS

FSW = 0.1730

Unknown

APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT5G13480

Predicted

Affinity Capture-MS

FSW = 0.0934

Unknown

FY PROTEIN BINDING
AT5G14530

Predicted

Affinity Capture-MS

FSW = 0.1153

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G03210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3927

Unknown

PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN
AT4G02850

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0933

Unknown

PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454