Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02930 - ( elongation factor Tu putative / EF-Tu putative )

77 Proteins interacs with AT4G02930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07920Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0961

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07930Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0186

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT4G37910

Predicted

pull down

FSW = 0.1803

Class C:

mitochondrion

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT1G53000

Predicted

pull down

FSW = 0.1071

Class C:

mitochondrion

CYTIDYLYLTRANSFERASE FAMILY
AT1G50840

Predicted

pull down

FSW = 0.1153

Class C:

mitochondrion

POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G62750

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0854

Class C:

mitochondrion

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G13490

Predicted

pull down

FSW = 0.0524

Class C:

mitochondrion

OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G22800

Predicted

pull down

FSW = 0.0646

Class C:

mitochondrion

EMB1030 (EMBRYO DEFECTIVE 1030) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G10690

Predicted

pull down

FSW = 0.2251

Class C:

mitochondrion

DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT5G23140

Predicted

pull down

FSW = 0.1088

Class C:

mitochondrion

NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G14810

Predicted

pull down

FSW = 0.0434

Class C:

mitochondrion

SEMIALDEHYDE DEHYDROGENASE FAMILY PROTEIN
AT5G60390

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0219

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0405

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G14610

Predicted

pull down

FSW = 0.0154

Class C:

mitochondrion

TWN2 (TWIN 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / VALINE-TRNA LIGASE
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0061

Class C:

mitochondrion

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G11060

Predicted

pull down

FSW = 0.0850

Class C:

mitochondrion

MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT5G26860

Predicted

pull down

FSW = 0.1143

Class C:

mitochondrion

LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G57300

Predicted

pull down

FSW = 0.0127

Class C:

mitochondrion

UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN
AT4G11120

Predicted

two hybrid

pull down

Synthetic Rescue

interologs mapping

FSW = 0.0639

Class C:

mitochondrion

TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE
AT4G11160

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0222

Class C:

mitochondrion

TRANSLATION INITIATION FACTOR IF-2 MITOCHONDRIAL PUTATIVE
AT5G04130

Predicted

pull down

FSW = 0.1414

Class C:

mitochondrion

DNA TOPOISOMERASE ATP-HYDROLYZING PUTATIVE / DNA TOPOISOMERASE II PUTATIVE / DNA GYRASE PUTATIVE
AT5G41790

Predicted

pull down

FSW = 0.0398

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G67940

Predicted

pull down

FSW = 0.0650

Unknown

ATNAP3 TRANSPORTER
AT5G57655

Predicted

pull down

FSW = 0.0122

Unknown

XYLOSE ISOMERASE FAMILY PROTEIN
AT2G36990

Predicted

pull down

FSW = 0.0504

Unknown

SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT2G33800

Predicted

pull down

FSW = 0.2095

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G20360

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1429

Unknown

ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR
AT2G04270

Predicted

pull down

FSW = 0.0562

Unknown

RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT1G18440

Predicted

pull down

FSW = 0.0411

Unknown

PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT1G65410

Predicted

pull down

FSW = 0.0494

Unknown

ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) TRANSPORTER
AT3G18680

Predicted

pull down

FSW = 0.1057

Unknown

ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT5G15450

Predicted

pull down

FSW = 0.0237

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G55280

Predicted

pull down

FSW = 0.0876

Unknown

FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT2G22360

Predicted

pull down

FSW = 0.1303

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT5G66470

Predicted

pull down

FSW = 0.0634

Unknown

GTP BINDING / RNA BINDING
AT2G22230

Predicted

pull down

FSW = 0.0876

Unknown

BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT4G15560

Predicted

pull down

FSW = 0.0272

Unknown

CLA1 (CLOROPLASTOS ALTERADOS 1) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE
AT4G21210

Predicted

pull down

FSW = 0.0268

Unknown

ATRP1 (PPDK REGULATORY PROTEIN) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE
AT5G03940

Predicted

pull down

FSW = 0.1299

Unknown

CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
AT5G49030

Predicted

pull down

FSW = 0.0186

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G02260

Predicted

pull down

FSW = 0.0501

Unknown

RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT4G01800

Predicted

pull down

FSW = 0.1554

Unknown

PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
AT3G57610

Predicted

Affinity Capture-MS

FSW = 0.0342

Unknown

ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE
ATCG00190Predicted

pull down

FSW = 0.1046

Unknown

CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00160Predicted

pull down

FSW = 0.2847

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT2G36880

Predicted

pull down

FSW = 0.1651

Unknown

MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT1G24510

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0059

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT5G57015

Predicted

biochemical

FSW = 0.0079

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G77180

Predicted

two hybrid

FSW = 0.0071

Unknown

CHROMATIN PROTEIN FAMILY
AT5G53350

Predicted

pull down

FSW = 0.1240

Unknown

CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G33740

Predicted

pull down

FSW = 0.0556

Unknown

CUTA COPPER ION BINDING
AT1G79500

Predicted

pull down

FSW = 0.0866

Unknown

2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT2G21790

Predicted

pull down

FSW = 0.0135

Unknown

RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT4G26840

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0143

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G23580

Predicted

pull down

FSW = 0.0389

Unknown

RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT2G18230

Predicted

pull down

FSW = 0.0256

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G60780

Predicted

two hybrid

Affinity Capture-MS

interaction prediction

FSW = 0.0106

Unknown

HAP13 (HAPLESS 13) PROTEIN BINDING
AT5G45190

Predicted

two hybrid

two hybrid

FSW = 0.0033

Unknown

CYCLIN FAMILY PROTEIN
AT1G05900

Predicted

pull down

FSW = 0.0600

Unknown

ENDONUCLEASE-RELATED
AT1G32490

Predicted

pull down

FSW = 0.0635

Unknown

ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G64550

Predicted

pull down

FSW = 0.0042

Unknown

ATGCN3 TRANSPORTER
AT2G04560Predicted

pull down

FSW = 0.0459

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G20060

Predicted

pull down

FSW = 0.2215

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT2G25870

Predicted

pull down

FSW = 0.0494

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G31955

Predicted

pull down

FSW = 0.0404

Unknown

CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) CATALYTIC
AT3G03500

Predicted

pull down

FSW = 0.0333

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G09140

Predicted

pull down

FSW = 0.0595

Unknown

MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT4G25540

Predicted

pull down

FSW = 0.0153

Unknown

MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G25730

Predicted

pull down

FSW = 0.0536

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G26780

Predicted

pull down

FSW = 0.1402

Unknown

AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT5G06410

Predicted

pull down

FSW = 0.0574

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT5G59440

Predicted

pull down

FSW = 0.0044

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0017

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G28360

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0106

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT1G10730

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G07990

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G55255Predicted

synthetic growth defect

FSW = 0.0043

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454