Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02930 - ( elongation factor Tu putative / EF-Tu putative )
77 Proteins interacs with AT4G02930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07920 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0961
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07930 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0186
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G37910 | Predictedpull down | FSW = 0.1803
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT1G53000 | Predictedpull down | FSW = 0.1071
| Class C:mitochondrion | CYTIDYLYLTRANSFERASE FAMILY |
AT1G50840 | Predictedpull down | FSW = 0.1153
| Class C:mitochondrion | POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G62750 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0854
| Class C:mitochondrion | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G13490 | Predictedpull down | FSW = 0.0524
| Class C:mitochondrion | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G22800 | Predictedpull down | FSW = 0.0646
| Class C:mitochondrion | EMB1030 (EMBRYO DEFECTIVE 1030) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G10690 | Predictedpull down | FSW = 0.2251
| Class C:mitochondrion | DNA GYRASE SUBUNIT A FAMILY PROTEIN |
AT5G23140 | Predictedpull down | FSW = 0.1088
| Class C:mitochondrion | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT1G14810 | Predictedpull down | FSW = 0.0434
| Class C:mitochondrion | SEMIALDEHYDE DEHYDROGENASE FAMILY PROTEIN |
AT5G60390 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0219
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0405
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G14610 | Predictedpull down | FSW = 0.0154
| Class C:mitochondrion | TWN2 (TWIN 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / VALINE-TRNA LIGASE |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0061
| Class C:mitochondrion | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G11060 | Predictedpull down | FSW = 0.0850
| Class C:mitochondrion | MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING |
AT5G26860 | Predictedpull down | FSW = 0.1143
| Class C:mitochondrion | LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G57300 | Predictedpull down | FSW = 0.0127
| Class C:mitochondrion | UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN |
AT4G11120 | Predictedtwo hybridpull downSynthetic Rescueinterologs mapping | FSW = 0.0639
| Class C:mitochondrion | TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE |
AT4G11160 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0222
| Class C:mitochondrion | TRANSLATION INITIATION FACTOR IF-2 MITOCHONDRIAL PUTATIVE |
AT5G04130 | Predictedpull down | FSW = 0.1414
| Class C:mitochondrion | DNA TOPOISOMERASE ATP-HYDROLYZING PUTATIVE / DNA TOPOISOMERASE II PUTATIVE / DNA GYRASE PUTATIVE |
AT5G41790 | Predictedpull down | FSW = 0.0398
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT1G67940 | Predictedpull down | FSW = 0.0650
| Unknown | ATNAP3 TRANSPORTER |
AT5G57655 | Predictedpull down | FSW = 0.0122
| Unknown | XYLOSE ISOMERASE FAMILY PROTEIN |
AT2G36990 | Predictedpull down | FSW = 0.0504
| Unknown | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT2G33800 | Predictedpull down | FSW = 0.2095
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT4G20360 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR |
AT2G04270 | Predictedpull down | FSW = 0.0562
| Unknown | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
AT1G18440 | Predictedpull down | FSW = 0.0411
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT1G65410 | Predictedpull down | FSW = 0.0494
| Unknown | ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) TRANSPORTER |
AT3G18680 | Predictedpull down | FSW = 0.1057
| Unknown | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
AT5G15450 | Predictedpull down | FSW = 0.0237
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G55280 | Predictedpull down | FSW = 0.0876
| Unknown | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT2G22360 | Predictedpull down | FSW = 0.1303
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G66470 | Predictedpull down | FSW = 0.0634
| Unknown | GTP BINDING / RNA BINDING |
AT2G22230 | Predictedpull down | FSW = 0.0876
| Unknown | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT4G15560 | Predictedpull down | FSW = 0.0272
| Unknown | CLA1 (CLOROPLASTOS ALTERADOS 1) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE |
AT4G21210 | Predictedpull down | FSW = 0.0268
| Unknown | ATRP1 (PPDK REGULATORY PROTEIN) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE |
AT5G03940 | Predictedpull down | FSW = 0.1299
| Unknown | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
AT5G49030 | Predictedpull down | FSW = 0.0186
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G02260 | Predictedpull down | FSW = 0.0501
| Unknown | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
AT4G01800 | Predictedpull down | FSW = 0.1554
| Unknown | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
AT3G57610 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE |
ATCG00190 | Predictedpull down | FSW = 0.1046
| Unknown | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
ATCG00160 | Predictedpull down | FSW = 0.2847
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT2G36880 | Predictedpull down | FSW = 0.1651
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT1G24510 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0059
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G57015 | Predictedbiochemical | FSW = 0.0079
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G77180 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | CHROMATIN PROTEIN FAMILY |
AT5G53350 | Predictedpull down | FSW = 0.1240
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G33740 | Predictedpull down | FSW = 0.0556
| Unknown | CUTA COPPER ION BINDING |
AT1G79500 | Predictedpull down | FSW = 0.0866
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT2G21790 | Predictedpull down | FSW = 0.0135
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0143
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G23580 | Predictedpull down | FSW = 0.0389
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT2G18230 | Predictedpull down | FSW = 0.0256
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G60780 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT5G45190 | Predictedtwo hybridtwo hybrid | FSW = 0.0033
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G05900 | Predictedpull down | FSW = 0.0600
| Unknown | ENDONUCLEASE-RELATED |
AT1G32490 | Predictedpull down | FSW = 0.0635
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G64550 | Predictedpull down | FSW = 0.0042
| Unknown | ATGCN3 TRANSPORTER |
AT2G04560 | Predictedpull down | FSW = 0.0459
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G20060 | Predictedpull down | FSW = 0.2215
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT2G25870 | Predictedpull down | FSW = 0.0494
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G31955 | Predictedpull down | FSW = 0.0404
| Unknown | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) CATALYTIC |
AT3G03500 | Predictedpull down | FSW = 0.0333
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G09140 | Predictedpull down | FSW = 0.0595
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT4G25540 | Predictedpull down | FSW = 0.0153
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G25730 | Predictedpull down | FSW = 0.0536
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G26780 | Predictedpull down | FSW = 0.1402
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT5G06410 | Predictedpull down | FSW = 0.0574
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G59440 | Predictedpull down | FSW = 0.0044
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0017
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G28360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0043
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454