Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G03190 - ( GRH1 (GRR1-LIKE PROTEIN 1) auxin binding / protein binding / ubiquitin-protein ligase )

8 Proteins interacs with AT4G03190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75950

Experimental

two hybrid

two hybrid

FSW = 0.0609

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G04550

Experimental

pull down

Reconstituted Complex

FSW = 0.0697

Unknown

IAA12 (AUXIN-INDUCED PROTEIN 12) TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT4G02570

Experimental

FSW = 0.0971

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT3G23050

Experimental

pull down

Reconstituted Complex

FSW = 0.2814

Unknown

IAA7 (INDOLE-3-ACETIC ACID 7) TRANSCRIPTION FACTOR
AT5G42190

Experimental

two hybrid

FSW = 0.0405

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G36800

Experimental

Reconstituted Complex

FSW = 0.0577

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT2G39940

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2381

Unknown

COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G15740

Predicted

Gene fusion method

FSW = 0.1062

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454