Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G03560 - ( ATTPC1 (TWO-PORE CHANNEL 1) calcium channel/ voltage-gated calcium channel )

9 Proteins interacs with AT4G03560
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G51500

Experimental

FSW = 0.0937

Class A:

vacuole

Class D:

plasma membrane (p = 0.25)

CER5 (ECERIFERUM 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G04910

Predicted

Phenotypic Enhancement

FSW = 0.0364

Class C:

vacuole

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G08080

Predicted

in vivo

FSW = 0.1633

Unknown

SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR
AT1G05570

Predicted

interaction prediction

FSW = 0.0298

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT4G34390

Predicted

in vitro

FSW = 0.0430

Unknown

XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT1G58050

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0697

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT1G29810

Predicted

in vivo

in vitro

two hybrid

FSW = 0.1262

Unknown

DEHYDRATASE FAMILY
AT3G18370

Predicted

in vitro

FSW = 0.1113

Unknown

ATSYTF
AT1G53710

Predicted

Synthetic Rescue

Enriched domain pair

Co-expression

FSW = 0.0460

Unknown

HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454