Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04210 - ( PUX4 protein binding )

71 Proteins interacs with AT4G04210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09840

Experimental

inferred by author

FSW = 0.0903

Unknown

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G76040

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G12010

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

UNKNOWN PROTEIN
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0078

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.1124

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G12110

Predicted

Phenotypic Enhancement

FSW = 0.0414

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0178

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G43670

Predicted

Affinity Capture-MS

FSW = 0.0769

Unknown

FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.0151

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G25070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0406

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G59830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0382

Unknown

PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G07640

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT4G07950

Predicted

Phenotypic Enhancement

FSW = 0.0166

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.1450

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G14340

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0041

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G24490

Predicted

Phenotypic Suppression

FSW = 0.0474

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G21700

Predicted

Affinity Capture-MS

FSW = 0.0231

Unknown

SGP2 GTP BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1355

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0173

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G03870

Predicted

Phenotypic Suppression

FSW = 0.1116

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G54840

Predicted

Affinity Capture-MS

FSW = 0.0116

Unknown

SGP1 GTP BINDING
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.0814

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G05120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0355

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G15430

Predicted

Synthetic Lethality

FSW = 0.0618

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G20400

Predicted

Phenotypic Enhancement

FSW = 0.0312

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0250

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G25150

Predicted

Phenotypic Enhancement

FSW = 0.0455

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT3G02580

Predicted

Phenotypic Enhancement

FSW = 0.0420

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT2G31970

Predicted

Phenotypic Suppression

FSW = 0.0510

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT4G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0146

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT5G03340

Predicted

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-Western

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0604

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0263

Unknown

RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.0808

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200

Predicted

Synthetic Lethality

FSW = 0.1125

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G12340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0440

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT1G04730Predicted

Synthetic Lethality

FSW = 0.1136

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.1232

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Enhancement

FSW = 0.1157

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49540

Predicted

Phenotypic Suppression

FSW = 0.0694

Unknown

NUCLEOTIDE BINDING
AT1G50670

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1231

Unknown

OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1614

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0339

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.1842

Unknown

SNL5 (SIN3-LIKE 5)
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0134

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G66740

Predicted

Synthetic Lethality

FSW = 0.0818

Unknown

SGA2
AT2G17190

Predicted

Phenotypic Enhancement

FSW = 0.0123

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G19720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0972

Unknown

RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G28390

Predicted

Phenotypic Enhancement

FSW = 0.0513

Unknown

SAND FAMILY PROTEIN
AT2G32730

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G39840

Predicted

Synthetic Rescue

FSW = 0.0241

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G02820

Predicted

synthetic growth defect

FSW = 0.1214

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0589

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.0787

Unknown

HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Affinity Capture-MS

Phenotypic Suppression

Co-purification

Affinity Capture-Western

interaction prediction

FSW = 0.2304

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.1143

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

Phenotypic Enhancement

FSW = 0.0878

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Phenotypic Suppression

FSW = 0.0857

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G10360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0696

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G25120Predicted

synthetic growth defect

FSW = 0.0814

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G10790

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1882

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13780

Predicted

Phenotypic Suppression

FSW = 0.1200

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G15400

Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-Western

interaction prediction

FSW = 0.1435

Unknown

U-BOX DOMAIN-CONTAINING PROTEIN
AT5G41880

Predicted

Phenotypic Suppression

FSW = 0.1013

Unknown

POLA3 DNA PRIMASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0847

Unknown

ORMDL FAMILY PROTEIN
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.1791

Unknown

GAS41 PROTEIN BINDING
AT5G61150

Predicted

Phenotypic Suppression

FSW = 0.1034

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1510

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT1G26665

Predicted

Affinity Capture-MS

FSW = 0.0343

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT2G29400

Predicted

Synthetic Rescue

FSW = 0.0115

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G22150

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0600

Unknown

PUX3 PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454