Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04870 - ( CLS (CARDIOLIPIN SYNTHASE) cardiolipin synthase/ phosphatidyltransferase )
24 Proteins interacs with AT4G04870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0240
| Class C:mitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.0659
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G26590 | Predictedbiochemical | FSW = 0.0206
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | SCRAMBLASE-RELATED |
AT3G48930 | Predictedbiochemical | FSW = 0.0252
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0828
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G63110 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0694
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G47100 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | CBL9 CALCIUM ION BINDING |
AT2G41790 | PredictedAffinity Capture-MS | FSW = 0.0756
| Unknown | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G24270 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT1G07340 | Predictedtwo hybrid | FSW = 0.0433
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0078
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT4G14240 | Predictedbiochemical | FSW = 0.0072
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0072
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0135
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G16700 | PredictedSynthetic Lethality | FSW = 0.0269
| Unknown | PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454