Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04885 - ( PCFS4 (PCF11P-SIMILAR PROTEIN 4) zinc ion binding )
31 Proteins interacs with AT4G04885Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G55990 | Experimental | FSW = 0.0205
| Unknown | CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING |
AT3G04680 | Experimentaltwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.3411
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT5G13480 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1401
| Unknown | FY PROTEIN BINDING |
AT1G30460 | Experimental | FSW = 0.1571
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT1G66500 | Experimental | FSW = 0.5319
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
AT5G43620 | Experimental | FSW = 0.2457
| Unknown | S-LOCUS PROTEIN-RELATED |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G73820 | PredictedAffinity Capture-Western | FSW = 0.1764
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT4G35800 | Predictedtwo hybridtwo hybridReconstituted Complextwo hybridsynthetic growth defectProtein-peptide | FSW = 0.0418
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G34230 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G17980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1984
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0508
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G23880 | Predictedin vivoin vitro | FSW = 0.3266
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G51660 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3130
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G55670 | Predictedin vivoin vitro | FSW = 0.0277
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G17070 | Predictedtwo hybrid | FSW = 0.0413
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G17760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternSynthetic Lethality | FSW = 0.2705
| Unknown | CSTF77 PROTEIN BINDING |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | UNKNOWN PROTEIN |
AT1G61010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2084
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT1G22290 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G47090 | Predictedtwo hybridinterologs mappingSynthetic Lethality | FSW = 0.0191
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G32180 | PredictedAffinity Capture-MStwo hybridtwo hybridSynthetic LethalityAffinity Capture-MS | FSW = 0.1046
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT5G47430 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.2886
| Unknown | ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454