Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04910 - ( NSF (N-ethylmaleimide sensitive factor) ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding )
72 Proteins interacs with AT4G04910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0056
| Class A:vacuoleClass B:plasma membraneperoxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G33120 | PredictedAffinity Capture-Western | FSW = 0.0574
| Class C:vacuole | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT5G42080 | PredictedPhenotypic Suppression | FSW = 0.0112
| Class C:vacuole | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G66140 | Predictedtwo hybrid | FSW = 0.0226
| Class C:vacuole | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G56190 | PredictedSynthetic LethalityReconstituted Complexin vivoco-fractionationCo-fractionationAffinity Capture-Westernin vivoReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Lethalityinterologs mappinginteraction prediction | FSW = 0.1011
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G12360 | PredictedPhenotypic Suppression | FSW = 0.0845
| Class C:vacuole | KEU (KEULE) PROTEIN TRANSPORTER |
AT2G45200 | Predictedin vivoin vivoCo-expression | FSW = 0.1756
| Class C:vacuole | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G46860 | PredictedAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0806
| Class C:vacuole | VAM3 SNAP RECEPTOR |
AT4G16520 | Predictedin vivoin vitro | FSW = 0.0074
| Class C:vacuole | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT2G07050 | PredictedSynthetic Lethality | FSW = 0.0237
| Class C:vacuole | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT1G79590 | Predictedin vivo | FSW = 0.0608
| Class C:vacuole | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT4G03560 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Class C:vacuole | ATTPC1 (TWO-PORE CHANNEL 1) CALCIUM CHANNEL/ VOLTAGE-GATED CALCIUM CHANNEL |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0077
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G58060 | PredictedAffinity Capture-Western | FSW = 0.1303
| Unknown | YKT61 |
AT3G02520 | Predictedinterologs mapping | FSW = 0.0142
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G73820 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G38480 | Predictedinterologs mapping | FSW = 0.0285
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G08080 | PredictedPhenotypic Enhancementin vivoPhenotypic Enhancementin vivoin vitro | FSW = 0.0790
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT1G11890 | Predictedinterologs mappingPhenotypic EnhancementAffinity Capture-Western | FSW = 0.1219
| Unknown | SEC22 TRANSPORTER |
AT1G61290 | Predictedin vitroin vivo | FSW = 0.0754
| Unknown | SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR |
AT1G63110 | PredictedSynthetic Lethality | FSW = 0.0177
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G15780 | PredictedPhenotypic Enhancement | FSW = 0.0493
| Unknown | ATVAMP724 |
AT2G19760 | PredictedSynthetic Lethality | FSW = 0.0297
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT3G55930 | Predictedtwo hybrid | FSW = 0.0206
| Unknown | RNA SPLICING FACTOR-RELATED |
AT2G45640 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G28060 | Predictedtwo hybridtwo hybrid | FSW = 0.0078
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0314
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G75510 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G24350 | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Western | FSW = 0.1430
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT5G05760 | PredictedPhenotypic Enhancement | FSW = 0.0959
| Unknown | SYP31 (SYNTAXIN OF PLANTS 31) SNAP RECEPTOR |
AT1G18260 | PredictedPhenotypic Enhancement | FSW = 0.0475
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G51740 | Predictedinterologs mapping | FSW = 0.0641
| Unknown | SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING |
AT1G16470 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G20570 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G42830 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT2G19770 | PredictedSynthetic Lethality | FSW = 0.0287
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0015
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G57950 | Predictedtwo hybrid | FSW = 0.0206
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | RNA HELICASE PUTATIVE |
AT3G27530 | Predictedin vivo | FSW = 0.0395
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G25260 | PredictedSynthetic Lethality | FSW = 0.0081
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G60620 | PredictedSynthetic Lethality | FSW = 0.0087
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G27970 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34980 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G43650 | PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT3G12180 | PredictedPhenotypic Suppression | FSW = 0.1095
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G01560 | PredictedSynthetic Lethality | FSW = 0.0086
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT1G05785 | PredictedPhenotypic Enhancement | FSW = 0.0273
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G08750 | PredictedPhenotypic Enhancement | FSW = 0.0479
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G17140 | PredictedPhenotypic Suppression | FSW = 0.0074
| Unknown | TROPOMYOSIN-RELATED |
AT1G21170 | PredictedPhenotypic Suppression | FSW = 0.0144
| Unknown | SEC5B |
AT1G79990 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0706
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G17980 | PredictedSynthetic Lethality | FSW = 0.1576
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0336
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.0336
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0311
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0198
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G54750 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0790
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0678
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G32270 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0442
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT3G03180 | Predictedinterologs mapping | FSW = 0.0493
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1048
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G02010 | PredictedPhenotypic Suppression | FSW = 0.0506
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G51160 | PredictedSynthetic Lethality | FSW = 0.0489
| Unknown | SYNBINDIN PUTATIVE |
AT1G12730 | PredictedSynthetic Lethality | FSW = 0.0458
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT2G27960 | PredictedSynthetic Lethality | FSW = 0.0073
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT1G66960 | PredictedSynthetic Lethality | FSW = 0.0226
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454