Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04940 - ( transducin family protein / WD-40 repeat family protein )

34 Proteins interacs with AT4G04940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25470

Predicted

Gene fusion method

FSW = 0.0493

Unknown

ATRLP21 (RECEPTOR LIKE PROTEIN 21) PROTEIN BINDING
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5112

Unknown

BINDING
AT1G62740

Predicted

Synthetic Lethality

FSW = 0.0263

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4020

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.2405

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G56990

Predicted

Affinity Capture-MS

FSW = 0.4691

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5095

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G08180

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0798

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2990

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.4346

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT5G66540

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5226

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT4G05410

Predicted

Affinity Capture-MS

FSW = 0.6127

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G57000

Predicted

Affinity Capture-MS

FSW = 0.6299

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT2G47990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4276

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.3518

Unknown

UNKNOWN PROTEIN
AT1G06720

Predicted

Affinity Capture-MS

FSW = 0.5787

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2074

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G17250

Predicted

Affinity Capture-MS

FSW = 0.5500

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.4040

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5095

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G56510

Predicted

Affinity Capture-MS

FSW = 0.3586

Unknown

TBP-BINDING PROTEIN PUTATIVE
AT3G59410

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0031

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6820

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6108

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450

Predicted

Affinity Capture-MS

FSW = 0.6102

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.5007

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3694

Unknown

RNA BINDING
AT5G14050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

Co-expression

FSW = 0.3004

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15750

Predicted

Affinity Capture-MS

FSW = 0.6219

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4067

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G67320

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0060

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G27470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4211

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G12270

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0279

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT4G10590

Predicted

Gene fusion method

FSW = 0.1053

Unknown

UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454