Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04950 - ( thioredoxin family protein )

39 Proteins interacs with AT4G04950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G09590

Predicted

Affinity Capture-MS

FSW = 0.0228

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G07680

Predicted

Affinity Capture-MS

FSW = 0.0436

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G21640

Predicted

two hybrid

FSW = 0.0112

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT4G01310

Predicted

pull down

FSW = 0.0209

Unknown

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT3G54900

Predicted

Synthetic Rescue

FSW = 0.1047

Unknown

CXIP1 (CAX INTERACTING PROTEIN 1) ANTIPORTER/ GLUTATHIONE DISULFIDE OXIDOREDUCTASE
AT1G80190

Predicted

Affinity Capture-MS

FSW = 0.0355

Unknown

PSF1 (PARTNER OF SLD FIVE 1)
ATCG00160Predicted

pull down

FSW = 0.0073

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

pull down

FSW = 0.0199

Unknown

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00800Predicted

pull down

FSW = 0.0231

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

pull down

FSW = 0.0268

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0173

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT1G02780

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0074

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12480

Predicted

biochemical

FSW = 0.0084

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G21010

Predicted

Affinity Capture-MS

FSW = 0.0233

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G02580

Predicted

pull down

FSW = 0.0224

Unknown

NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE
AT2G05170

Predicted

Affinity Capture-MS

FSW = 0.0145

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G17810

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G13900

Predicted

Affinity Capture-MS

FSW = 0.0317

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT3G05000

Predicted

two hybrid

two hybrid

FSW = 0.0393

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT1G55805

Predicted

pull down

FSW = 0.0952

Unknown

BOLA-LIKE FAMILY PROTEIN
AT5G09290

Predicted

pull down

FSW = 0.0335

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT5G64670

Predicted

pull down

FSW = 0.0247

Unknown

RIBOSOMAL PROTEIN L15 FAMILY PROTEIN
AT3G21070

Predicted

two hybrid

FSW = 0.0598

Unknown

NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING
AT5G18400

Predicted

two hybrid

FSW = 0.0229

Unknown

UNKNOWN PROTEIN
AT1G60730

Predicted

interologs mapping

FSW = 0.0144

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0057

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G27340

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G01100

Predicted

Affinity Capture-MS

FSW = 0.0164

Unknown

HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G49880

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT4G04695

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

ACID PHOSPHATASE PUTATIVE
AT5G09830

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0445

Unknown

BOLA-LIKE FAMILY PROTEIN
AT5G26110

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0204

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G45990

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454