Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04955 - ( ATALN (Arabidopsis allantoinase) allantoinase/ hydrolase )

17 Proteins interacs with AT4G04955
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0223

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT2G17630

Predicted

pull down

FSW = 0.0471

Unknown

PHOSPHOSERINE AMINOTRANSFERASE PUTATIVE
AT5G20980

Predicted

pull down

FSW = 0.0410

Unknown

ATMS3 (METHIONINE SYNTHASE 3) 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0291

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT5G10050

Predicted

pull down

FSW = 0.0500

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G29120

Predicted

pull down

FSW = 0.0443

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE NAD-BINDING DOMAIN-CONTAINING PROTEIN
AT2G22040

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G03040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0612

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G32415

Predicted

Affinity Capture-MS

FSW = 0.0463

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT3G61740

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G62760

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G21800

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT1G14620

Predicted

interaction prediction

two hybrid

FSW = 0.0381

Unknown

DECOY (DECOY)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454