Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G05040 - ( ankyrin repeat family protein )
15 Proteins interacs with AT4G05040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13860 | PredictedGene fusion method | FSW = 0.0611
| Unknown | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT1G54610 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1113
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G21160 | PredictedGene fusion method | FSW = 0.0410
| Unknown | MANNOSYL-OLIGOSACCHARIDE 12-ALPHA-MANNOSIDASE PUTATIVE |
AT5G56680 | PredictedGene fusion method | FSW = 0.1270
| Unknown | SYNC1 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G12270 | PredictedGene fusion methodCo-expression | FSW = 0.3240
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G03480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1015
| Unknown | PROTEIN BINDING |
AT4G03470 | PredictedPhylogenetic profile method | FSW = 0.0896
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G66120 | PredictedGene fusion method | FSW = 0.0997
| Unknown | ACYL-ACTIVATING ENZYME 11 (AAE11) |
AT1G26900 | PredictedGene fusion method | FSW = 0.1696
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G46950 | PredictedGene fusion method | FSW = 0.0803
| Unknown | CYP709B2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G18610 | PredictedGene fusion method | FSW = 0.1861
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G741501) HAS 8761 BLAST HITS TO 4412 PROTEINS IN 271 SPECIES ARCHAE - 12 BACTERIA - 304 METAZOA - 4209 FUNGI - 851 PLANTS - 1246 VIRUSES - 11 OTHER EUKARYOTES - 2128 (SOURCE NCBI BLINK) |
AT5G17380 | PredictedGene fusion method | FSW = 0.1895
| Unknown | PYRUVATE DECARBOXYLASE FAMILY PROTEIN |
AT4G15060 | PredictedGene fusion method | FSW = 0.2222
| Unknown | F-BOX PROTEIN-RELATED |
AT1G12570 | PredictedGene fusion method | FSW = 0.0410
| Unknown | GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN |
AT4G39640 | PredictedGene fusion method | FSW = 0.0556
| Unknown | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454