Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G05330 - ( AGD13 (ARF-GAP domain 13) ARF GTPase activator/ zinc ion binding )

15 Proteins interacs with AT4G05330
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0512

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G17745

Predicted

interaction prediction

FSW = 0.0357

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.1616

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0212

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G18280

Predicted

Phenotypic Enhancement

FSW = 0.2185

Unknown

ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE
AT4G21160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1184

Unknown

ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING
AT1G48760

Predicted

Phenotypic Enhancement

FSW = 0.1704

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G37550

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0321

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G50860

Predicted

Phenotypic Enhancement

FSW = 0.1107

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0161

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT4G12460

Predicted

Phenotypic Enhancement

FSW = 0.1103

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT5G27970Predicted

Phenotypic Suppression

FSW = 0.0414

Unknown

BINDING
AT3G07940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0803

Unknown

ZINC FINGER AND C2 DOMAIN PROTEIN PUTATIVE
AT1G09470

Predicted

Gene fusion method

FSW = 0.0832

Unknown

UNKNOWN PROTEIN
AT3G05830

Predicted

Gene fusion method

FSW = 0.0832

Unknown

ENCODES ALPHA-HELICAL IF (INTERMEDIATE FILAMENT)-LIKE PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454