Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08580 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN chloroplast EXPRESSED IN male gametophyte pollen tube EXPRESSED DURING L mature pollen stage M germinated pollen stage CONTAINS InterPro DOMAIN/s Micro-fibrillar-associated 1 C-terminal (InterProIPR009730) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G179001) Has 39042 Blast hits to 22601 proteins in 1140 species Archae - 179 Bacteria - 2955 Metazoa - 18595 Fungi - 3264 Plants - 1100 Viruses - 245 Other Eukaryotes - 12704 (source NCBI BLink) )

4 Proteins interacs with AT4G08580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G17590

Predicted

two hybrid

FSW = 0.0117

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G28560

Predicted

two hybrid

FSW = 0.0863

Unknown

SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2) DNA BINDING
AT3G54350

Predicted

two hybrid

FSW = 0.0282

Unknown

EMB1967 (EMBRYO DEFECTIVE 1967)
AT2G40650

Predicted

two hybrid

FSW = 0.0863

Unknown

PRE-MRNA SPLICING FACTOR PRP38 FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454