Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08920 - ( CRY1 (CRYPTOCHROME 1) ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase )

6 Proteins interacs with AT4G08920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09570

Experimental

interaction detection method

two hybrid

FSW = 0.1440

Class A:

nucleus

cytosol

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT5G57360

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.0613

Class A:

nucleus

cytosol

Class D:

cytosol (p = 0.67)

 ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G32950

Experimental

two hybrid

two hybrid

confocal microscopy

two hybrid

Reconstituted Complex

Affinity Capture-Western

coimmunoprecipitation

affinity technology

in vitro

FSW = 0.0667

Class A:

nucleus

cytosol

 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G38480

Experimental

pull down

FSW = 0.0296

Class A:

cytosol

Class B:

plasma membrane

peroxisome

nucleus

Class D:

cytosol (p = 0.67)

 GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G60010

Experimental

protein kinase assay

FSW = 0.0413

Unknown

 ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G04400

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1684

Class C:

nucleus

 CRY2 (CRYPTOCHROME 2) BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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