Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G09000 - ( 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) )

19 Proteins interacs with AT4G09000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.1459

Class A:

plasma membrane

nucleus

Class B:

vacuole

plastid

peroxisome

cytosol

cytoskeleton

Class D:

plasma membrane (p = 0.25)

cytosol (p = 0.67)

 GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G37130

Experimental

two hybrid

FSW = 0.4354

Class A:

plasma membrane

Class B:

vacuole

plastid

nucleus

Class D:

cytosol (p = 0.67)

 NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE
AT5G38480

Experimental

pull down

FSW = 0.3203

Class A:

plasma membrane

Class B:

plastid

peroxisome

nucleus

cytosol

Class D:

cytosol (p = 0.67)

 GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G55630

Experimental

Reconstituted Complex

in vitro

FSW = 0.0745

Class B:

vacuole

plastid

plasma membrane

nucleus

Class D:

plasma membrane (p = 0.25)

 ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT1G75540

Experimental

FSW = 0.1212

Class D:

cytosol (p = 0.67)

 STH2 (SALT TOLERANCE HOMOLOG2) TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G03450

Experimental

pull down

FSW = 0.0462

Class D:

cytosol (p = 0.67)

 RGL2 (RGA-LIKE 2) TRANSCRIPTION FACTOR
AT5G28640

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0381

Unknown

 AN3 (ANGUSTIFOLIA 3) PROTEIN BINDING / TRANSCRIPTION COACTIVATOR
AT1G01160

Experimental

two hybrid

FSW = 0.0356

Unknown

 SSXT PROTEIN-RELATED / TRANSCRIPTION CO-ACTIVATOR-RELATED
AT4G00850

Experimental

two hybrid

FSW = 0.0368

Unknown

 GIF3 (GRF1-INTERACTING FACTOR 3) PROTEIN BINDING / TRANSCRIPTION COACTIVATOR
AT5G10450

Predicted

Phylogenetic profile method

FSW = 0.2074

Class C:

plastid

plasma membrane

nucleus

 GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G02520

Predicted

Phylogenetic profile method

FSW = 0.2090

Class C:

plastid

plasma membrane

 GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G65430

Predicted

Phylogenetic profile method

FSW = 0.1635

Class C:

plastid

nucleus

 GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G42590

Predicted

Phylogenetic profile method

FSW = 0.2534

Class C:

plasma membrane

nucleus

 GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160

Predicted

Phylogenetic profile method

FSW = 0.3414

Class C:

plasma membrane

nucleus

 GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G22300

Predicted

Phylogenetic profile method

FSW = 0.3104

Class C:

plasma membrane

 GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G16050

Predicted

Phylogenetic profile method

FSW = 0.7316

Class C:

plasma membrane

 GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G26480

Predicted

Phylogenetic profile method

FSW = 0.5121

Unknown

 GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G34760

Predicted

Phylogenetic profile method

FSW = 0.5690

Unknown

 GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78220

Predicted

Phylogenetic profile method

FSW = 0.8235

Unknown

 GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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