Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G09720 - ( Ras-related GTP-binding protein putative )
38 Proteins interacs with AT4G09720| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G23190
   | PredictedAffinity Capture-MS | FSW = 0.0354
| Class C:vacuole | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT4G17530
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3277
| Class C:vacuole | ATRAB1C GTP BINDING |
| AT1G02130
| PredictedPhylogenetic profile method | FSW = 0.1651
| Class C:vacuole | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G52280
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6682
| Class C:vacuole | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
| AT1G49300
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3338
| Class C:vacuole | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
| AT3G46060
| PredictedPhylogenetic profile method | FSW = 0.2955
| Class C:vacuole | ATRAB8A GTP BINDING |
| AT1G22740
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4293
| Class C:vacuole | RABG3B GTP BINDING |
| AT2G21880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2847
| Class C:vacuole | ATRAB7A GTP BINDING |
| AT1G16030
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0283
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT5G51820
| PredictedSynthetic Lethality | FSW = 0.0307
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT3G16100
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2060
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
| AT3G18820
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2933
| Unknown | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
| AT1G70730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2401
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT3G53610
| PredictedPhylogenetic profile method | FSW = 0.3445
| Unknown | ATRAB8 GTP BINDING |
| AT3G09900
| PredictedPhylogenetic profile method | FSW = 0.2268
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT5G59840
| PredictedPhylogenetic profile method | FSW = 0.3266
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
| AT5G47200
| PredictedPhylogenetic profile method | FSW = 0.2992
| Unknown | ATRAB1A GTP BINDING |
| AT1G80050
| PredictedSynthetic Lethality | FSW = 0.0198
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
| AT1G43890
| PredictedPhylogenetic profile method | FSW = 0.3609
| Unknown | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT3G11730
| PredictedPhylogenetic profile method | FSW = 0.1608
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT5G64990
| PredictedGene fusion methodCo-expression | FSW = 0.2151
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
| AT1G29330
| PredictedSynthetic Lethality | FSW = 0.0288
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
| AT5G03520
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4667
| Unknown | ATRAB8C GTP BINDING |
| AT3G24830
| Predictedtwo hybrid | FSW = 0.0603
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT1G33040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1164
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT1G49520
| PredictedCo-purification | FSW = 0.0605
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT1G52500
| PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
| AT1G55810
| PredictedSynthetic Lethality | FSW = 0.0432
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
| AT1G60710
| PredictedAffinity Capture-Western | FSW = 0.1534
| Unknown | ATB2 OXIDOREDUCTASE |
| AT4G26510
| PredictedAffinity Capture-Western | FSW = 0.1180
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
| AT4G30540
| PredictedSynthetic Lethality | FSW = 0.1032
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
| AT5G16170
| Predictedsynthetic growth defect | FSW = 0.0059
| Unknown | UNKNOWN PROTEIN |
| AT5G22480
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.0888
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
| AT5G39620
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6224
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT4G39890
| PredictedPhylogenetic profile method | FSW = 0.3171
| Unknown | ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING |
| AT3G09910
| PredictedPhylogenetic profile method | FSW = 0.3879
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT5G03530
| PredictedPhylogenetic profile method | FSW = 0.3277
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT3G09890
| PredictedGene fusion method | FSW = 0.2328
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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