Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G09750 - ( short-chain dehydrogenase/reductase (SDR) family protein )

8 Proteins interacs with AT4G09750
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G37640

Predicted

Gene fusion method

FSW = 0.0972

Unknown

UBQ9 PROTEIN BINDING
AT4G23430

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.1564

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G37540

Predicted

Phylogenetic profile method

FSW = 0.2317

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G11410

Predicted

Phylogenetic profile method

FSW = 0.4482

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G23420

Predicted

Phylogenetic profile method

FSW = 0.3206

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G02540

Predicted

Phylogenetic profile method

FSW = 0.5724

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G64590

Predicted

Phylogenetic profile method

FSW = 0.7171

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G24050

Predicted

Phylogenetic profile method

FSW = 0.5724

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454