Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10040 - ( CYTC-2 (cytochrome c-2) electron carrier/ heme binding / iron ion binding )
37 Proteins interacs with AT4G10040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0169
| Class C:mitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G02090 | Predictedin vitroAffinity Capture-MS | FSW = 0.0105
| Class C:mitochondrion | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT3G27240 | Predictedin vitroEnriched domain pairCo-expression | FSW = 0.0539
| Class C:mitochondrion | CYTOCHROME C1 PUTATIVE |
AT3G12580 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0167
| Class C:mitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G40810 | Predictedin vitro | FSW = 0.0418
| Class C:mitochondrion | CYTOCHROME C1 PUTATIVE |
AT1G22840 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0802
| Class C:mitochondrion | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0242
| Class C:mitochondrion | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0098
| Class C:mitochondrion | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G54770 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Class C:mitochondrion | THI1 PROTEIN HOMODIMERIZATION |
AT4G05450 | Predictedin vivo | FSW = 0.0364
| Class C:mitochondrion | ADRENODOXIN-LIKE FERREDOXIN 2 |
AT5G02500 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0311
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT2G17360 | Predictedinterologs mappinginterologs mapping | FSW = 0.0320
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G37130 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0896
| Unknown | NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0184
| Unknown | UNKNOWN PROTEIN |
AT4G37870 | PredictedAffinity Capture-MSCo-crystal Structure | FSW = 0.0831
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | DDL (DAWDLE) |
AT5G02490 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0155
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G61200 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G30860 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT5G48810 | PredictedAffinity Capture-MSin vitro | FSW = 0.0515
| Unknown | CB5-D (CYTOCHROME B5 ISOFORM D) HEME BINDING |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0161
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G24706 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | UNKNOWN PROTEIN |
AT2G20330 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G57350 | Predictedtwo hybrid | FSW = 0.0488
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT5G22480 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT1G77760 | Predictedin vitro | FSW = 0.1254
| Unknown | NIA1 (NITRATE REDUCTASE 1) NITRATE REDUCTASE |
AT3G02280 | Predictedin vitro | FSW = 0.0400
| Unknown | FLAVODOXIN FAMILY PROTEIN |
AT1G07880 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G02320 | PredictedCo-crystal Structureinterologs mapping | FSW = 0.0839
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT1G53900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G60730 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.0151
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G06483 | Predictedinterologs mapping | FSW = 0.0147
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0617
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G19880 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.0431
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454