Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10070 - ( KH domain-containing protein )
19 Proteins interacs with AT4G10070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0382
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G55870 | Predictedin vitroin vivoCo-expression | FSW = 0.0356
| Unknown | AHG2 (ABA-HYPERSENSITIVE GERMINATION 2) NUCLEIC ACID BINDING / RIBONUCLEASE |
AT4G34430 | Predictedtwo hybrid | FSW = 0.0104
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G18510 | Predictedtwo hybrid | FSW = 0.0140
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G50670 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0056
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G53180 | Predictedin vivoin vitro | FSW = 0.1270
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G17590 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0303
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT5G66010 | Predictedin vitroin vitroin vivoin vivo | FSW = 0.0485
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G61420 | Predictedin vivoin vitro | FSW = 0.1204
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT4G00830 | Predictedin vitro | FSW = 0.1043
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G16390 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G32450 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G55670 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G26370 | Predictedtwo hybrid | FSW = 0.0909
| Unknown | RNA HELICASE PUTATIVE |
AT1G03360 | PredictedAffinity Capture-Western | FSW = 0.0540
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT3G12980 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0650
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G20760 | PredictedAffinity Capture-Western | FSW = 0.0381
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G27620 | Predictedin vitro | FSW = 0.0386
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G25355 | Predictedin vitroin vivoCo-expression | FSW = 0.0921
| Unknown | EXONUCLEASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454