Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G10320 - ( isoleucyl-tRNA synthetase putative / isoleucine--tRNA ligase putative )
18 Proteins interacs with AT4G10320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31490 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | DDL (DAWDLE) |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | DNA HELICASE PUTATIVE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0525
| Unknown | DNA HELICASE-RELATED |
AT3G43810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G72550 | PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN |
AT1G01910 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0141
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0088
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0172
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | F-BOX FAMILY PROTEIN |
AT3G20630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0293
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT4G03430 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0073
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G31480 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454