Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10450 - ( 60S ribosomal protein L9 (RPL90D) )

16 Proteins interacs with AT4G10450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G33120Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.2846

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT4G38920Predicted

two hybrid

FSW = 0.0561

Class C:

plasma membrane

ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE
AT1G50360

Predicted

synthetic growth defect

FSW = 0.2032

Class C:

plasma membrane

VIIIA MOTOR
AT4G04340

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0327

Class C:

plasma membrane

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G33140

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0376

Unknown

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0061

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G29210

Predicted

Affinity Capture-MS

FSW = 0.0222

Unknown

GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
AT1G26880

Predicted

Affinity Capture-MS

FSW = 0.0842

Unknown

60S RIBOSOMAL PROTEIN L34 (RPL34A)
AT5G53360

Predicted

two hybrid

FSW = 0.0168

Unknown

SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT3G19590

Predicted

two hybrid

FSW = 0.1286

Unknown

WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE
AT3G54630

Predicted

two hybrid

FSW = 0.0187

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT4G38630

Predicted

two hybrid

FSW = 0.0087

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G05920

Predicted

two hybrid

FSW = 0.1015

Unknown

DHS (DEOXYHYPUSINE SYNTHASE)
AT3G22590

Predicted

synthetic growth defect

FSW = 0.0118

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT5G08160

Predicted

Synthetic Lethality

FSW = 0.0301

Unknown

ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G26110

Predicted

interologs mapping

FSW = 0.0211

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454