Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10480 - ( nascent polypeptide associated complex alpha chain protein putative / alpha-NAC putative )
27 Proteins interacs with AT4G10480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G04620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0410
| Unknown | ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G55400 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G09570 | Predictedinterologs mapping | FSW = 0.0278
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT4G22380 | PredictedPhenotypic Enhancement | FSW = 0.0148
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G18620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridPhenotypic Enhancement | FSW = 0.0211
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT3G55430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0533
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT5G18380 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G08940 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1053
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT2G26260 | PredictedAffinity Capture-MS | FSW = 0.0968
| Unknown | AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT2G44820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Unknown | UNKNOWN PROTEIN |
AT3G18850 | PredictedSynthetic Rescue | FSW = 0.0241
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G21460 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G61740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0473
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G15440 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0093
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT4G00810 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | UNKNOWN PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37350 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | RIO1 FAMILY PROTEIN |
AT5G66610 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT4G21480 | PredictedPhenotypic Enhancement | FSW = 0.0253
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23420 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0222
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454