Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10670 - ( GTC2 )
54 Proteins interacs with AT4G10670| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G07790
   | PredictedAffinity Capture-MS | FSW = 0.1228
| Class C:nucleus | HTB1 DNA BINDING |
| AT1G45000
| PredictedAffinity Capture-Western | FSW = 0.0241
| Class C:nucleus | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT1G08130
| Predictedsynthetic growth defect | FSW = 0.0362
| Class C:nucleus | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0295
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT2G44680
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1404
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT3G13940
| PredictedSynthetic Lethality | FSW = 0.0231
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G54610
| Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1327
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT1G63210
| PredictedAffinity Capture-MS | FSW = 0.2529
| Class C:nucleus | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
| AT2G47620
| PredictedAffinity Capture-MS | FSW = 0.0679
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
| AT2G41630
| Predictedinterologs mapping | FSW = 0.0873
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
| AT1G03280
| PredictedAffinity Capture-Westerninterologs mappingReconstituted Complex | FSW = 0.1016
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
| AT3G44530
| PredictedSynthetic Lethality | FSW = 0.1353
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G24440
| Predictedinterologs mappingSynthetic Lethality | FSW = 0.0988
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
| AT4G38130
| Predictedsynthetic growth defect | FSW = 0.0726
| Class C:nucleus | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT2G34210
| PredictedAffinity Capture-MS | FSW = 0.2319
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT2G13370
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1726
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G06230
| PredictedAffinity Capture-MS | FSW = 0.1930
| Class C:nucleus | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
| AT1G07470
| Predictedinterologs mapping | FSW = 0.0590
| Class C:nucleus | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
| AT1G55520
| Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2055
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT1G19120
| Predictedtwo hybrid | FSW = 0.0362
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G06210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1386
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
| AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1546
| Unknown | HISTONE H4 |
| AT4G35800
| PredictedAffinity Capture-MS | FSW = 0.1089
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G19990
| PredictedSynthetic RescueAffinity Capture-WesternSynthetic Rescue | FSW = 0.0202
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT2G19480
| PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT2G40360
| PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G28730
| PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinterologs mappingReconstituted Complexsynthetic growth defectSynthetic Lethality | FSW = 0.3651
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
| AT3G23890
| PredictedAffinity Capture-MS | FSW = 0.1409
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
| AT1G16190
| PredictedAffinity Capture-Western | FSW = 0.0514
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G63960
| Predictedsynthetic growth defect | FSW = 0.0203
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G15400
| PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G05910
| PredictedAffinity Capture-MS | FSW = 0.0799
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
| AT5G61150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1014
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
| AT1G79730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1603
| Unknown | ELF7 (EARLY FLOWERING 7) |
| AT5G08565
| PredictedAffinity Capture-MS | FSW = 0.2217
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT1G61040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2051
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
| AT2G23080
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2169
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT3G22590
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1568
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT4G33670
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | L-GALACTOSE DEHYDROGENASE (L-GALDH) |
| AT5G55300
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0525
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
| AT2G23070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1409
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G09200 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.2466
| Unknown | HISTONE H3 |
| AT1G08880
| PredictedAffinity Capture-MS | FSW = 0.0880
| Unknown | H2AXA DNA BINDING |
| AT3G09100
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0903
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT5G67100
| Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingsynthetic growth defecttwo hybrid | FSW = 0.0472
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
| AT4G20330
| PredictedAffinity Capture-Western | FSW = 0.0811
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
| AT3G42660
| Predictedinterologs mappingsynthetic growth defect | FSW = 0.0835
| Unknown | NUCLEOTIDE BINDING |
| AT1G08840 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0703
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
| AT5G50320
| Predictedsynthetic growth defect | FSW = 0.1170
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
| AT5G09740
| Predictedsynthetic growth defect | FSW = 0.1335
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0625
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT3G58560
| PredictedSynthetic Lethality | FSW = 0.0943
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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