Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10670 - ( GTC2 )

54 Proteins interacs with AT4G10670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.1228

Class C:

nucleus

HTB1 DNA BINDING
AT1G45000

Predicted

Affinity Capture-Western

FSW = 0.0241

Class C:

nucleus

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT1G08130

Predicted

synthetic growth defect

FSW = 0.0362

Class C:

nucleus

ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0295

Class C:

nucleus

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT2G44680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1404

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G13940

Predicted

Synthetic Lethality

FSW = 0.0231

Class C:

nucleus

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G54610

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1327

Class C:

nucleus

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G63210

Predicted

Affinity Capture-MS

FSW = 0.2529

Class C:

nucleus

RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT2G47620

Predicted

Affinity Capture-MS

FSW = 0.0679

Class C:

nucleus

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G41630

Predicted

interologs mapping

FSW = 0.0873

Class C:

nucleus

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G03280

Predicted

Affinity Capture-Western

interologs mapping

Reconstituted Complex

FSW = 0.1016

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT3G44530

Predicted

Synthetic Lethality

FSW = 0.1353

Class C:

nucleus

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G24440

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0988

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT4G38130

Predicted

synthetic growth defect

FSW = 0.0726

Class C:

nucleus

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.2319

Class C:

nucleus

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT2G13370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1726

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G06230

Predicted

Affinity Capture-MS

FSW = 0.1930

Class C:

nucleus

GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT1G07470

Predicted

interologs mapping

FSW = 0.0590

Class C:

nucleus

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G55520

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2055

Class C:

nucleus

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G19120

Predicted

two hybrid

FSW = 0.0362

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G06210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1386

Class C:

nucleus

ELF8 (EARLY FLOWERING 8) BINDING
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.1546

Unknown

HISTONE H4
AT4G35800

Predicted

Affinity Capture-MS

FSW = 0.1089

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G19990

Predicted

Synthetic Rescue

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0202

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G19480

Predicted

Affinity Capture-MS

FSW = 0.1161

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G65040

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G40360

Predicted

Affinity Capture-MS

FSW = 0.0121

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G28730

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

interologs mapping

Reconstituted Complex

synthetic growth defect

Synthetic Lethality

FSW = 0.3651

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G23890

Predicted

Affinity Capture-MS

FSW = 0.1409

Unknown

TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT1G16190

Predicted

Affinity Capture-Western

FSW = 0.0514

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G63960

Predicted

synthetic growth defect

FSW = 0.0203

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G15400

Predicted

Affinity Capture-MS

FSW = 0.0513

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G05910

Predicted

Affinity Capture-MS

FSW = 0.0799

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT5G61150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1014

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT1G79730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.1603

Unknown

ELF7 (EARLY FLOWERING 7)
AT5G08565

Predicted

Affinity Capture-MS

FSW = 0.2217

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G61040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2051

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2169

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G22590

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1568

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G33670

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

L-GALACTOSE DEHYDROGENASE (L-GALDH)
AT5G55300

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0525

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT2G23070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1409

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G09200Predicted

Affinity Capture-MS

interologs mapping

FSW = 0.2466

Unknown

HISTONE H3
AT1G08880

Predicted

Affinity Capture-MS

FSW = 0.0880

Unknown

H2AXA DNA BINDING
AT3G09100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0903

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT5G67100

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

synthetic growth defect

two hybrid

FSW = 0.0472

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT4G20330

Predicted

Affinity Capture-Western

FSW = 0.0811

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT3G42660

Predicted

interologs mapping

synthetic growth defect

FSW = 0.0835

Unknown

NUCLEOTIDE BINDING
AT1G08840Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0703

Unknown

EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT5G50320

Predicted

synthetic growth defect

FSW = 0.1170

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1335

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G04730Predicted

synthetic growth defect

FSW = 0.0625

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G58560

Predicted

Synthetic Lethality

FSW = 0.0943

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454