Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10710 - ( SPT16 (global transcription factor C) )
71 Proteins interacs with AT4G10710| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G28730
   | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.3934
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
| AT2G06510
| PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0571
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT5G59690 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1730
| Class C:nucleus | HISTONE H4 |
| AT1G08130
| Predictedsynthetic growth defectinteraction prediction | FSW = 0.0281
| Class C:nucleus | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
| AT2G44680
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1558
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT3G10330
| Predictedinterologs mapping | FSW = 0.0533
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
| AT3G13940
| PredictedSynthetic Lethality | FSW = 0.0335
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G54610
| Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1517
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT1G17790
| PredictedAffinity Capture-MS | FSW = 0.1501
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
| AT4G21010
| PredictedAffinity Capture-Western | FSW = 0.0342
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR-RELATED |
| AT2G47620
| PredictedAffinity Capture-MS | FSW = 0.0924
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
| AT1G03280
| PredictedAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0486
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
| AT4G30860
| Predictedsynthetic growth defect | FSW = 0.1176
| Class C:nucleus | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
| AT3G13445
| Predictedinterologs mappingSynthetic Lethalitysynthetic growth defect | FSW = 0.0856
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT3G44530
| PredictedSynthetic Lethality | FSW = 0.1217
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G24440
| Predictedinterologs mappingSynthetic Lethality | FSW = 0.0775
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
| AT1G07470
| Predictedinterologs mapping | FSW = 0.0333
| Class C:nucleus | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
| AT2G13370
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescuesynthetic growth defect | FSW = 0.2250
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G65440
| PredictedAffinity Capture-MS | FSW = 0.1371
| Class C:nucleus | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
| AT2G15430
| PredictedAffinity Capture-MS | FSW = 0.0710
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.0627
| Class C:nucleus | HISTONE H2B PUTATIVE |
| AT4G08350
| PredictedAffinity Capture-MS | FSW = 0.1937
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT1G19120
| Predictedtwo hybridinteraction prediction | FSW = 0.0709
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G06210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1674
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
| AT4G35800
| PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G63110
| Predictedsynthetic growth defect | FSW = 0.0848
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
| AT3G12110
| Predictedinteraction prediction | FSW = 0.0288
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT4G26110
| PredictedAffinity Capture-MS | FSW = 0.1232
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT5G19990
| PredictedSynthetic RescueAffinity Capture-WesternSynthetic RescuePhenotypic Enhancement | FSW = 0.0403
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT5G12480
| Predictedbiochemical | FSW = 0.0127
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT2G40360
| PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G23890
| PredictedAffinity Capture-MS | FSW = 0.0972
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
| AT1G16190
| Predictedinteraction prediction | FSW = 0.0318
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G63960
| Predictedsynthetic growth defect | FSW = 0.0158
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G63860
| PredictedAffinity Capture-MS | FSW = 0.1005
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT5G38470
| PredictedAffinity Capture-Western | FSW = 0.0396
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0878
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT1G08840 | Predictedsynthetic growth defectsynthetic growth defectinteraction prediction | FSW = 0.0696
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
| AT1G52740
| PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2225
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G61040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2082
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
| AT1G79730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1706
| Unknown | ELF7 (EARLY FLOWERING 7) |
| AT2G23070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1359
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT2G44150
| PredictedSynthetic Rescue | FSW = 0.1007
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
| AT3G22590
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1568
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT3G42660
| Predictedinterologs mappingsynthetic growth defectinteraction predictionCo-expression | FSW = 0.1004
| Unknown | NUCLEOTIDE BINDING |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G05910
| PredictedAffinity Capture-MS | FSW = 0.0868
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
| AT1G08880
| PredictedAffinity Capture-MS | FSW = 0.1110
| Unknown | H2AXA DNA BINDING |
| AT2G37840
| Predictedbiochemical | FSW = 0.0234
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G01090
| Predictedbiochemical | FSW = 0.0323
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT3G09100
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1081
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.1175
| Unknown | HISTONE H4 |
| AT3G58560
| PredictedSynthetic Lethality | FSW = 0.0761
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT4G08500
| Predictedbiochemical | FSW = 0.0032
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
| AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
| AT5G10390 | PredictedAffinity Capture-MSSynthetic Rescue | FSW = 0.2345
| Unknown | HISTONE H3 |
| AT5G10400 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.2264
| Unknown | HISTONE H3 |
| AT5G49010
| PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
| AT5G55310
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0994
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
| AT5G58410
| PredictedPhenotypic Enhancement | FSW = 0.2333
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G61150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2062
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
| AT5G63670
| PredictedAffinity Capture-MS | FSW = 0.2475
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT5G67100
| Predictedinteraction predictioninterologs mappingAffinity Capture-WesternAffinity Capture-Westerntwo hybridinterologs mappingsynthetic growth defectCo-expression | FSW = 0.0370
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
| AT4G33670
| PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | L-GALACTOSE DEHYDROGENASE (L-GALDH) |
| AT5G09740
| Predictedsynthetic growth defect | FSW = 0.1679
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G43010
| PredictedAffinity Capture-Western | FSW = 0.0162
| Unknown | RPT4A ATPASE |
| AT5G50320
| Predictedsynthetic growth defect | FSW = 0.1060
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
| AT1G07270
| Predictedinteraction prediction | FSW = 0.0276
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0482
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G55300
| Predictedinteraction predictionCo-expression | FSW = 0.0295
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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