Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10920 - ( KELP DNA binding / transcription coactivator/ transcription regulator )
83 Proteins interacs with AT4G10920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G40930 | Experimental | FSW = 0.0120
| Unknown | TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G09250 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0124
| Class D:nucleus (p = 0.78) | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0054
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT2G36530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0688
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT5G12010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0653
| Unknown | UNKNOWN PROTEIN |
AT3G08710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0654
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT2G34480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0220
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0276
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G03240 | PredictedSynthetic Rescue | FSW = 0.0098
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
AT3G59280 | PredictedSynthetic Lethality | FSW = 0.0390
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0653
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G36790 | Predictedfluorescence acceptor donor pairAffinity Capture-Western | FSW = 0.0562
| Unknown | PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G06850 | PredictedAffinity Capture-MS | FSW = 0.0562
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G30390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0458
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.0835
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0621
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G62880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationco-fractionationCo-fractionation | FSW = 0.1660
| Unknown | ARAC10 GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridCo-purification | FSW = 0.1549
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G35020 | PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT2G47160 | PredictedSynthetic Lethality | FSW = 0.0747
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT1G04750 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1402
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G77210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0435
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1340
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G36590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0546
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT1G02680 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationco-fractionationCo-fractionation | FSW = 0.0908
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G20150 | Predictedtwo hybrid | FSW = 0.0246
| Unknown | SPX1 (SPX DOMAIN GENE 1) |
AT2G20510 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G25780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1212
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G31470 | Predictedtwo hybrid | FSW = 0.0432
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G17800 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | ARAC1 GTP BINDING |
AT3G02560 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0598
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT5G18380 | PredictedAffinity Capture-MSReconstituted ComplexReconstituted Complextwo hybridtwo hybridAffinity Capture-WesternReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-MSReconstituted ComplexSynthetic RescueAffinity Capture-Western | FSW = 0.0796
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT4G27070 | PredictedReconstituted Complex | FSW = 0.1143
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT3G54820 | PredictedAffinity Capture-MS | FSW = 0.0670
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT1G77990 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0562
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G29430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3382
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.0543
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G04480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1071
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G05910 | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G20920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1246
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G63150 | Predictedtwo hybrid | FSW = 0.0243
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.3234
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G80460 | Predictedtwo hybrid | FSW = 0.0757
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G34250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0203
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G40570 | Predictedtwo hybrid | FSW = 0.0243
| Unknown | INITIATOR TRNA PHOSPHORIBOSYL TRANSFERASE FAMILY PROTEIN |
AT2G46710 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0757
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G46860 | PredictedAffinity Capture-Western | FSW = 0.0372
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G45590 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT4G00810 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0146
| Unknown | PUX4 PROTEIN BINDING |
AT4G10360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0261
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | UNKNOWN PROTEIN |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0310
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G48605 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.1476
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G59580 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G60680 | PredictedAffinity Capture-Western | FSW = 0.0218
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MSColocalizationAffinity Capture-Western | FSW = 0.0548
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G37925 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G12200 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0652
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G62760 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G04700 | PredictedAffinity Capture-Western | FSW = 0.0346
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21800 | PredictedPhenotypic Enhancement | FSW = 0.1768
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0749
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G13860 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternProtein-peptide | FSW = 0.0489
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0554
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0361
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G33670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0259
| Unknown | L-GALACTOSE DEHYDROGENASE (L-GALDH) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G16750 | PredictedColocalizationReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0128
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454