Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11080 - ( high mobility group (HMG1/2) family protein )
12 Proteins interacs with AT4G11080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G16630 | PredictedSynthetic Rescue | FSW = 0.0205
| Unknown | RAD4 DAMAGED DNA BINDING |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0314
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G13445 | Predictedin vivo | FSW = 0.0081
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0042
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G37560 | PredictedSynthetic LethalityCo-expression | FSW = 0.0321
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G28030 | PredictedSynthetic Rescue | FSW = 0.0314
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT3G12280 | Predictedin vivoin vitro | FSW = 0.0260
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G54180 | Predictedin vivoin vitro | FSW = 0.0694
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT3G19040 | Predictedin vivoin vitrotwo hybrid | FSW = 0.2315
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT5G67380 | PredictedbiochemicalReconstituted Complex | FSW = 0.0069
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G11300 | Predictedin vitroin vivo | FSW = 0.1208
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G59440 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0489
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454