Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11150 - ( TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) proton-transporting ATPase rotational mechanism )
20 Proteins interacs with AT4G11150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G35410 | Experimentalinteraction detection method | FSW = 0.0188
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT3G16640 | Predictedtwo hybridtwo hybrid | FSW = 0.0833
| Class C:vacuoleplasma membrane | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT3G42050 | Predictedtwo hybridtwo hybridtwo hybridin vitroCo-expression | FSW = 0.1113
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT3G09790 | Predictedtwo hybridtwo hybrid | FSW = 0.0497
| Class C:vacuole | UBQ8 PROTEIN BINDING |
AT1G64200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1024
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0091
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0283
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G03690 | Predictedin vitrotwo hybrid | FSW = 0.0409
| Class C:plasma membrane | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT5G04990 | Predictedtwo hybridtwo hybrid | FSW = 0.0217
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
AT5G40840 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | SYN2 |
AT3G05540 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G08690 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT3G21430 | Predictedtwo hybrid | FSW = 0.0994
| Unknown | DNA BINDING |
AT4G25950 | Predictedtwo hybridtwo hybrid | FSW = 0.0101
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G38260 | Predictedtwo hybridtwo hybrid | FSW = 0.0334
| Unknown | UNKNOWN PROTEIN |
AT5G16270 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT5G20620 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | UBQ4 PROTEIN BINDING |
AT5G56150 | Predictedtwo hybridtwo hybrid | FSW = 0.0319
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT5G46190 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT3G08560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0914
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454