Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11160 - ( translation initiation factor IF-2 mitochondrial putative )

6 Proteins interacs with AT4G11160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G02930

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0222

Class C:

mitochondrion

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G01370

Predicted

biochemical

FSW = 0.0101

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0136

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0201

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT2G16880

Predicted

Gene fusion method

FSW = 0.1303

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G68930

Predicted

Gene fusion method

FSW = 0.1684

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454