Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11240 - ( TOPP7 protein serine/threonine phosphatase )

16 Proteins interacs with AT4G11240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G37640

Predicted

Gene fusion method

FSW = 0.0900

Unknown

UBQ9 PROTEIN BINDING
AT3G54140

Predicted

two hybrid

FSW = 0.0301

Unknown

PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER
AT1G59830

Predicted

Phylogenetic profile method

FSW = 0.3799

Unknown

PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G64040

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6914

Unknown

TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G23380

Predicted

Phenotypic Suppression

Phenotypic Enhancement

Co-expression

FSW = 0.0383

Unknown

CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT5G52200

Predicted

Phenotypic Suppression

two hybrid

FSW = 0.0921

Unknown

UNKNOWN PROTEIN
AT5G47790

Predicted

Phenotypic Suppression

two hybrid

FSW = 0.2395

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G79000

Predicted

two hybrid

FSW = 0.0462

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT5G60040

Predicted

two hybrid

Co-expression

FSW = 0.0500

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT2G29400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2161

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G05580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6173

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT5G59160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4079

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G27840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5698

Unknown

TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G39840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1839

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G43380

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5698

Unknown

TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G46820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6385

Unknown

TOPP5 PROTEIN SERINE/THREONINE PHOSPHATASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454