Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11330 - ( ATMPK5 (MAP KINASE 5) MAP kinase/ kinase )
94 Proteins interacs with AT4G11330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29810 | Experimental | FSW = 0.0196
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2042
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT5G56000 | Predictedin vivo | FSW = 0.0421
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT1G54270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0523
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G10050 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G31300 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2686
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT5G23300 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | PYRD (PYRIMIDINE D) DIHYDROOROTATE DEHYDROGENASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.2289
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.1234
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1911
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G19160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1357
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.1888
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G63110 | Predictedfar western blottingReconstituted Complextwo hybridAffinity Capture-MS | FSW = 0.0089
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.2422
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G71860 | PredictedPhenotypic Suppression | FSW = 0.0399
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT1G12310 | Predictedtwo hybridtwo hybrid | FSW = 0.0192
| Unknown | CALMODULIN PUTATIVE |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G09740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2639
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1299
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G45970 | PredictedPhenotypic SuppressionPhenotypic SuppressionCo-purification | FSW = 0.0501
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.2060
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G17750 | Predictedin vitro | FSW = 0.0059
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G19330 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0234
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G16970 | Predictedin vitroin vivo | FSW = 0.0198
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT3G51840 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE |
AT1G48050 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G11260 | Predictedin vivoin vitro | FSW = 0.0097
| Unknown | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT2G18510 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1104
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT5G16820 | PredictedAffinity Capture-MSin vivo | FSW = 0.0392
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G77180 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | CHROMATIN PROTEIN FAMILY |
AT5G60440 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0460
| Unknown | AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G24440 | PredictedPhenotypic Suppression | FSW = 0.0131
| Unknown | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
AT5G58590 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING |
AT5G12840 | Predictedtwo hybrid | FSW = 0.0153
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT3G15220 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G02470 | PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | DPA TRANSCRIPTION FACTOR |
AT5G17690 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0227
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT2G20510 | Predictedtwo hybrid | FSW = 0.0034
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2250
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT5G03840 | Predictedin vivoin vitro | FSW = 0.0435
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT5G04230 | Predictedtwo hybrid | FSW = 0.0102
| Unknown | PAL3 (PHENYL ALANINE AMMONIA-LYASE 3) PHENYLALANINE AMMONIA-LYASE |
AT5G03730 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementin vivo | FSW = 0.0734
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G71230 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.1344
| Unknown | PSF2 |
AT3G07880 | PredictedCo-purification | FSW = 0.0118
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT5G53360 | PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT2G26990 | Predictedin vivo | FSW = 0.0184
| Unknown | FUS12 (FUSCA 12) |
AT1G62850 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | TRANSLATION RELEASE FACTOR |
AT3G04240 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | DGCR14-RELATED |
AT3G27120 | Predictedtwo hybrid | FSW = 0.0236
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G12280 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0240
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G56580 | Predictedtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vivoin vivoin vivoin vitroin vitroin vitroin vivoin vivoin vivoin vitroin vitroin vitroin vivoPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementtwo hybridbiochemicalAffinity Capture-Western | FSW = 0.1439
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT4G23930 | Predictedtwo hybrid | FSW = 0.0686
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT4G35410 | Predictedtwo hybrid | FSW = 0.0087
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G39090 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | RD19 (RESPONSIVE TO DEHYDRATION 19) CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE PEPTIDASE |
AT5G05920 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | DHS (DEOXYHYPUSINE SYNTHASE) |
AT5G12410 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT5G19360 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G35320 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0180
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT3G59020 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0115
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT1G02970 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT1G18660 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G54180 | Predictedtwo hybrid | FSW = 0.0299
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G21820 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0367
| Unknown | BINDING / CALMODULIN BINDING |
AT5G57610 | PredictedPhenotypic SuppressionPhenotypic Suppressionin vivoin vitro | FSW = 0.0648
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G04550 | Predictedin vivoin vitroin vitroin vivoin vitroin vivoin vitrotwo hybrid | FSW = 0.0165
| Unknown | IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT3G09080 | Predictedtwo hybrid | FSW = 0.0412
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23720 | Predictedin vitroin vivo | FSW = 0.0104
| Unknown | PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT5G28290 | Predictedtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0233
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G61070 | Predictedin vitro | FSW = 0.0323
| Unknown | HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2854
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.2390
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1781
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1433
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.1188
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2195
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2087
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.1177
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.2980
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.1470
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.1576
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.2728
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454