Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G11820 - ( MVA1 acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase )
25 Proteins interacs with AT4G11820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G27400 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G16360 | PredictedAffinity Capture-MS | FSW = 0.1429
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25A) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G21580 | PredictedAffinity Capture-MS | FSW = 0.1536
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25B) |
AT2G36620 | PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G26080 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | ATGLDP2 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 2) ATP BINDING / GLYCINE DEHYDROGENASE (DECARBOXYLATING) |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT2G39460 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0239
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G30590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0381
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G53020 | PredictedAffinity Capture-MS | FSW = 0.1836
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0230
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G34750 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0270
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.1170
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G55170 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454