Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12400 - ( stress-inducible protein putative )
21 Proteins interacs with AT4G12400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04120 | PredictedAffinity Capture-Western | FSW = 0.0152
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G56000 | Predictedtwo hybridin vitro | FSW = 0.0448
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT5G63310 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT5G59250 | PredictedGene fusion method | FSW = 0.0665
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT4G02450 | Predictedin vitro | FSW = 0.0703
| Unknown | GLYCINE-RICH PROTEIN |
AT1G62740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0975
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G78120 | PredictedGene fusion methodCo-expression | FSW = 0.0315
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G31180 | PredictedGene fusion method | FSW = 0.1773
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT4G36250 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT2G47990 | PredictedGene fusion method | FSW = 0.0283
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT1G12270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0424
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT5G63320 | PredictedGene fusion method | FSW = 0.4506
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BROMODOMAIN (INTERPROIPR001487) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) DNA BINDING (TAIRAT5G142701) HAS 44558 BLAST HITS TO 24285 PROTEINS IN 1236 SPECIES ARCHAE - 185 BACTERIA - 3450 METAZOA - 19774 FUNGI - 4003 PLANTS - 1404 VIRUSES - 349 OTHER EUKARYOTES - 15393 (SOURCE NCBI BLINK) |
AT2G41860 | PredictedGene fusion method | FSW = 0.0684
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G06140 | PredictedGene fusion method | FSW = 0.1852
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G56310 | PredictedGene fusion method | FSW = 0.2646
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G71370 | PredictedGene fusion method | FSW = 0.0775
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G58260 | PredictedGene fusion method | FSW = 0.1109
| Unknown | CYP79C2 (CYTOCHROME P450 79C2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G34160 | PredictedGene fusion method | FSW = 0.2364
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G63330 | PredictedGene fusion method | FSW = 0.3054
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G46660 | PredictedGene fusion method | FSW = 0.1142
| Unknown | CYP78A6 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454