Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12440 - ( adenine phosphoribosyltransferase putative )

18 Proteins interacs with AT4G12440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G13080

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT1G62750

Predicted

pull down

FSW = 0.0346

Unknown

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G08840

Predicted

pull down

FSW = 0.1088

Unknown

D-ALANINE--D-ALANINE LIGASE FAMILY
AT5G62790

Predicted

pull down

FSW = 0.0368

Unknown

DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE REDUCTOISOMERASE
AT3G61430

Predicted

Affinity Capture-MS

FSW = 0.0633

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G27450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1016

Unknown

APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT3G19960

Predicted

Affinity Capture-MS

FSW = 0.0448

Unknown

ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.0556

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G80050

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0362

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G39795

Predicted

Affinity Capture-MS

FSW = 0.0346

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0291

Unknown

A37 PROTEIN HETERODIMERIZATION
AT4G22570

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3472

Unknown

APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT1G31170

Predicted

Affinity Capture-MS

FSW = 0.0078

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G34760

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G16040

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT1G09150

Predicted

two hybrid

FSW = 0.0963

Unknown

PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN
AT5G11160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4431

Unknown

APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5) ADENINE PHOSPHORIBOSYLTRANSFERASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454