Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12440 - ( adenine phosphoribosyltransferase putative )
18 Proteins interacs with AT4G12440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT1G62750 | Predictedpull down | FSW = 0.0346
| Unknown | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G08840 | Predictedpull down | FSW = 0.1088
| Unknown | D-ALANINE--D-ALANINE LIGASE FAMILY |
AT5G62790 | Predictedpull down | FSW = 0.0368
| Unknown | DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE REDUCTOISOMERASE |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.0633
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G27450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1016
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT3G19960 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G80050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0362
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT4G22570 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3472
| Unknown | APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34760 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G09150 | Predictedtwo hybrid | FSW = 0.0963
| Unknown | PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN |
AT5G11160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4431
| Unknown | APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5) ADENINE PHOSPHORIBOSYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454