Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12790 - ( ATP-binding family protein )
20 Proteins interacs with AT4G12790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09440 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT2G43160 | PredictedAffinity Capture-MS | FSW = 0.1166
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | DDL (DAWDLE) |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0573
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT3G45850 | PredictedAffinity Capture-MS | FSW = 0.0535
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G29510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0986
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
AT5G02730 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33720 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G18380 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT4G21800 | Predictedtwo hybridtwo hybrid | FSW = 0.0214
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G80710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0272
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.0377
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.0417
| Unknown | UNKNOWN PROTEIN |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.0389
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G08600 | PredictedAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1341
| Unknown | U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN |
AT5G22370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1875
| Unknown | QQT1 (QUATRE-QUART 1) ATP BINDING / NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454