Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G13020 - ( MHK ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
59 Proteins interacs with AT4G13020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G43810 | Experimentalprotein array | FSW = 0.0131
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0146
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G23050 | Experimentalprotein array | FSW = 0.0476
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G51920 | Experimentalprotein array | FSW = 0.0199
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.0026
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT4G14640 | Experimentalprotein array | FSW = 0.0179
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.0138
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1325
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0287
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedAffinity Capture-MSAffinity Capture-MSProtein-peptide | FSW = 0.0550
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0670
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22890 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1674
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G51820 | PredictedSynthetic Lethality | FSW = 0.1873
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedPhenotypic Suppression | FSW = 0.1667
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0355
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.1020
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.2161
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0930
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.1567
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0792
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1567
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.2465
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0696
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0874
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.2454
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G39200 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2134
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.2017
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0380
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G33040 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G64170 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Unknown | ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G33560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0279
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.2465
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G47760 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G03180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0238
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0124
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G23460 | PredictedPhenotypic Enhancement | FSW = 0.2470
| Unknown | POLYGALACTURONASE |
AT1G29970 | PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.1961
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G68020 | PredictedPhenotypic Enhancement | FSW = 0.1773
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.0308
| Unknown | BOR5 ANION EXCHANGER |
AT1G75290 | PredictedPhenotypic Enhancement | FSW = 0.0513
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT1G78770 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1449
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.1950
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1439
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0529
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G47610 | Predictedsynthetic growth defect | FSW = 0.0542
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.1336
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G00810 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.2539
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.1430
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0401
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G60550 | PredictedSynthetic Lethality | FSW = 0.0233
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1724
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G01770 | PredictedPhenotypic Suppression | FSW = 0.1538
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G46150 | PredictedPhenotypic Enhancement | FSW = 0.0089
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT4G34110 | PredictedGene fusion method | FSW = 0.0074
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G19130 | PredictedGene fusion method | FSW = 0.0161
| Unknown | ATRBP47B (RNA-BINDING PROTEIN 47B) RNA BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454