Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G13780 - ( methionine--tRNA ligase putative / methionyl-tRNA synthetase putative / MetRS putative )
21 Proteins interacs with AT4G13780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13490 | Predictedin vitro | FSW = 0.0600
| Unknown | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G26300 | Predictedin vitroin vitroCo-expression | FSW = 0.1949
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
ATCG00830 | Predictedpull down | FSW = 0.0126
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT1G09620 | Predictedin vitroin vitroCo-expression | FSW = 0.0444
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G06720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0188
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G72560 | Predictedinterologs mapping | FSW = 0.0093
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT3G19290 | Predictedin vitro | FSW = 0.0370
| Unknown | ABF4 (ABRE BINDING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G26710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0139
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT4G31180 | Predictedin vitroin vitro | FSW = 0.0554
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT3G11710 | Predictedin vitro | FSW = 0.0720
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G25350 | Predictedin vitroCo-expression | FSW = 0.0900
| Unknown | OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE |
AT2G40660 | Predictedin vitro | FSW = 0.1600
| Unknown | TRNA-BINDING REGION DOMAIN-CONTAINING PROTEIN |
AT3G62120 | Predictedin vitroin vitro | FSW = 0.0912
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT4G26870 | Predictedin vitroin vitroGene neighbors methodCo-expression | FSW = 0.0758
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT1G04950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0098
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G30870 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G39770 | Predictedinteraction prediction | FSW = 0.0238
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454