Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G13940 - ( MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) adenosylhomocysteinase/ copper ion binding )

19 Proteins interacs with AT4G13940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G23810

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2603

Class C:

vacuole

plasma membrane

SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC
AT5G01750

Predicted

two hybrid

FSW = 0.0356

Class C:

plasma membrane

UNKNOWN PROTEIN
AT3G58500

Predicted

two hybrid

FSW = 0.0401

Unknown

PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G01320

Predicted

two hybrid

FSW = 0.0214

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT4G16760

Predicted

two hybrid

FSW = 0.0412

Unknown

ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT2G35690

Predicted

two hybrid

two hybrid

FSW = 0.0182

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT2G40360

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0176

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G18510

Predicted

two hybrid

FSW = 0.0295

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G36170Predicted

two hybrid

Co-expression

FSW = 0.0160

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT2G34720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0220

Unknown

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT5G44110

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

POP1 TRANSPORTER
AT5G03730

Predicted

two hybrid

FSW = 0.0180

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G05210

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0423

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT3G52590Predicted

two hybrid

FSW = 0.0313

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G45270

Predicted

two hybrid

two hybrid

FSW = 0.1818

Unknown

GLYCOPROTEASE M22 FAMILY PROTEIN
AT5G24510

Predicted

two hybrid

FSW = 0.0173

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE
AT3G47120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0468

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G15475

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT5G01720

Predicted

interaction prediction

FSW = 0.0435

Unknown

F-BOX FAMILY PROTEIN (FBL3)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454