Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G13940 - ( MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) adenosylhomocysteinase/ copper ion binding )
19 Proteins interacs with AT4G13940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23810 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2603
| Class C:vacuoleplasma membrane | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
AT5G01750 | Predictedtwo hybrid | FSW = 0.0356
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0401
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G01320 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0412
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT2G35690 | Predictedtwo hybridtwo hybrid | FSW = 0.0182
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G40360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0176
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G18510 | Predictedtwo hybrid | FSW = 0.0295
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G36170 | Predictedtwo hybridCo-expression | FSW = 0.0160
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT2G34720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0220
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT5G44110 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | POP1 TRANSPORTER |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G05210 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0423
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT3G52590 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45270 | Predictedtwo hybridtwo hybrid | FSW = 0.1818
| Unknown | GLYCOPROTEASE M22 FAMILY PROTEIN |
AT5G24510 | Predictedtwo hybrid | FSW = 0.0173
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT3G47120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0468
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G15475 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0435
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454