Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14240 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF21 (InterProIPR002550) Cystathionine beta-synthase core (InterProIPR000644) BEST Arabidopsis thaliana protein match is CBS domain-containing protein-related (TAIRAT4G142301) Has 6770 Blast hits to 6657 proteins in 1347 species Archae - 62 Bacteria - 4461 Metazoa - 254 Fungi - 179 Plants - 121 Viruses - 0 Other Eukaryotes - 1693 (source NCBI BLink) )

79 Proteins interacs with AT4G14240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

biochemical

FSW = 0.0058

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G08710

Predicted

biochemical

FSW = 0.0091

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G22840

Predicted

biochemical

FSW = 0.0161

Unknown

CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT5G46860

Predicted

biochemical

FSW = 0.0046

Unknown

VAM3 SNAP RECEPTOR
AT5G13450

Predicted

biochemical

FSW = 0.0258

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT3G11940

Predicted

biochemical

FSW = 0.0108

Unknown

ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G45960

Predicted

biochemical

FSW = 0.0077

Unknown

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G74030

Predicted

biochemical

FSW = 0.0085

Unknown

ENOLASE PUTATIVE
AT1G48850

Predicted

biochemical

FSW = 0.0189

Unknown

EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE
AT5G65430

Predicted

biochemical

FSW = 0.0126

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G31170

Predicted

biochemical

FSW = 0.0132

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G18440

Predicted

biochemical

FSW = 0.0130

Unknown

ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE
AT5G61410

Predicted

biochemical

FSW = 0.0217

Unknown

RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE
AT1G24280

Predicted

biochemical

FSW = 0.0177

Unknown

G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) GLUCOSE-6-PHOSPHATE DEHYDROGENASE
AT5G63980

Predicted

biochemical

FSW = 0.0090

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT2G14120

Predicted

biochemical

FSW = 0.0132

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT4G37640

Predicted

biochemical

FSW = 0.0089

Unknown

ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT4G36490

Predicted

biochemical

FSW = 0.0192

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G44290

Predicted

biochemical

FSW = 0.0126

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G04750

Predicted

biochemical

FSW = 0.0112

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G32670

Predicted

biochemical

FSW = 0.0262

Unknown

ATVAMP725
AT1G79450

Predicted

biochemical

FSW = 0.0124

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT2G30110

Predicted

biochemical

FSW = 0.0050

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT2G30260

Predicted

biochemical

FSW = 0.0068

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G75560

Predicted

Synthetic Rescue

FSW = 0.0072

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT1G60850

Predicted

biochemical

FSW = 0.0130

Unknown

ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G10110

Predicted

biochemical

FSW = 0.0394

Unknown

MEE67 (MATERNAL EFFECT EMBRYO ARREST 67) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER
AT4G14230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0248

Unknown

CBS DOMAIN-CONTAINING PROTEIN-RELATED
AT3G08980

Predicted

biochemical

FSW = 0.0096

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT4G04870

Predicted

biochemical

FSW = 0.0072

Unknown

CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE
AT3G60510

Predicted

biochemical

FSW = 0.0189

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT2G17270

Predicted

biochemical

FSW = 0.0173

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G47720

Predicted

biochemical

FSW = 0.0064

Unknown

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT1G50110

Predicted

biochemical

FSW = 0.0231

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6)
AT1G52300

Predicted

biochemical

FSW = 0.0182

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT5G41480

Predicted

biochemical

FSW = 0.0071

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G13320

Predicted

biochemical

FSW = 0.0085

Unknown

CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER
AT1G04480Predicted

biochemical

FSW = 0.0092

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G05785

Predicted

biochemical

FSW = 0.0460

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G11530

Predicted

biochemical

FSW = 0.0056

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G15240

Predicted

biochemical

FSW = 0.0173

Unknown

PHOX (PX) DOMAIN-CONTAINING PROTEIN
AT1G23300

Predicted

biochemical

FSW = 0.0108

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G30580

Predicted

biochemical

FSW = 0.0048

Unknown

GTP BINDING
AT1G67300

Predicted

biochemical

FSW = 0.0072

Unknown

HEXOSE TRANSPORTER PUTATIVE
AT2G01770

Predicted

biochemical

FSW = 0.0352

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G19910

Predicted

biochemical

FSW = 0.0436

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G27920

Predicted

biochemical

FSW = 0.0145

Unknown

SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G34250

Predicted

biochemical

FSW = 0.0282

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G36060

Predicted

biochemical

FSW = 0.0274

Unknown

UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT2G43190

Predicted

biochemical

FSW = 0.0262

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G44065

Predicted

biochemical

FSW = 0.0046

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT2G45330

Predicted

biochemical

FSW = 0.0163

Unknown

EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS
AT2G47870

Predicted

biochemical

FSW = 0.0078

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G13210

Predicted

biochemical

FSW = 0.0239

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G14090

Predicted

biochemical

FSW = 0.0155

Unknown

ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT3G29070

Predicted

biochemical

FSW = 0.0075

Unknown

PROTEIN TRANSMEMBRANE TRANSPORTER
AT3G44010Predicted

biochemical

FSW = 0.0089

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29B)
AT3G48960

Predicted

biochemical

FSW = 0.0120

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT3G49880

Predicted

biochemical

FSW = 0.0364

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G52560

Predicted

biochemical

FSW = 0.0111

Unknown

UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G57140

Predicted

biochemical

FSW = 0.0460

Unknown

PATATIN-RELATED
AT3G59790

Predicted

biochemical

FSW = 0.0134

Unknown

ATMPK10 MAP KINASE/ KINASE
AT3G61740

Predicted

biochemical

FSW = 0.0121

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G00810

Predicted

biochemical

FSW = 0.0070

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT3G06470

Predicted

interologs mapping

FSW = 0.1936

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT5G37350

Predicted

biochemical

FSW = 0.0103

Unknown

RIO1 FAMILY PROTEIN
AT4G17640

Predicted

biochemical

FSW = 0.0108

Unknown

CKB2 PROTEIN KINASE CK2 REGULATOR
AT4G19645

Predicted

biochemical

FSW = 0.0190

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G28070

Predicted

biochemical

FSW = 0.0130

Unknown

AFG1-LIKE ATPASE FAMILY PROTEIN
AT4G31590

Predicted

biochemical

FSW = 0.0265

Unknown

ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT4G32530

Predicted

biochemical

FSW = 0.0063

Unknown

VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT5G05420

Predicted

biochemical

FSW = 0.0282

Unknown

IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE
AT5G17000

Predicted

biochemical

FSW = 0.0390

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G44830

Predicted

biochemical

FSW = 0.0107

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G45020

Predicted

biochemical

FSW = 0.0181

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK)
AT5G49130

Predicted

biochemical

FSW = 0.0268

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G55180

Predicted

biochemical

FSW = 0.0217

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G66620

Predicted

biochemical

FSW = 0.0471

Unknown

DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING
AT1G03270

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0251

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G142401) HAS 6515 BLAST HITS TO 6357 PROTEINS IN 1347 SPECIES ARCHAE - 64 BACTERIA - 4189 METAZOA - 291 FUNGI - 188 PLANTS - 123 VIRUSES - 0 OTHER EUKARYOTES - 1660 (SOURCE NCBI BLINK)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454