Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14710 - ( acireductone dioxygenase [iron(II)-requiring]/ metal ion binding )
18 Proteins interacs with AT4G14710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G22170 | PredictedPhenotypic Enhancement | FSW = 0.1340
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT4G36490 | PredictedPhenotypic Enhancement | FSW = 0.1516
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0596
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G60360 | PredictedSynthetic Lethality | FSW = 0.1703
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G77990 | Predictedsynthetic growth defect | FSW = 0.0976
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT3G07370 | Predictedtwo hybridtwo hybrid | FSW = 0.0606
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT4G16360 | Predictedtwo hybridtwo hybrid | FSW = 0.0327
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT5G11900 | Predictedtwo hybridtwo hybrid | FSW = 0.0564
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0784
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G29970 | Predictedsynthetic growth defect | FSW = 0.1125
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT3G06483 | Predictedsynthetic growth defect | FSW = 0.1062
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.1407
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G14716 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3478
| Unknown | ATARD1 (ACIREDUCTONE DIOXYGENASE 1) ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT2G26400 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1341
| Unknown | ATARD3 (ACIREDUCTONE DIOXYGENASE 3) ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ HETEROGLYCAN BINDING / METAL ION BINDING |
AT5G43850 | PredictedPhylogenetic profile method | FSW = 0.4188
| Unknown | ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454