Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14710 - ( acireductone dioxygenase [iron(II)-requiring]/ metal ion binding )

18 Proteins interacs with AT4G14710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0101

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G22170

Predicted

Phenotypic Enhancement

FSW = 0.1340

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT4G36490

Predicted

Phenotypic Enhancement

FSW = 0.1516

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0417

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G25340

Predicted

Phenotypic Enhancement

FSW = 0.0596

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G60360

Predicted

Synthetic Lethality

FSW = 0.1703

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT1G77990

Predicted

synthetic growth defect

FSW = 0.0976

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT3G07370

Predicted

two hybrid

two hybrid

FSW = 0.0606

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT4G16360

Predicted

two hybrid

two hybrid

FSW = 0.0327

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT5G11900

Predicted

two hybrid

two hybrid

FSW = 0.0564

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT1G13580

Predicted

Phenotypic Enhancement

FSW = 0.0784

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G29970

Predicted

synthetic growth defect

FSW = 0.1125

Unknown

RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT3G06483

Predicted

synthetic growth defect

FSW = 0.1062

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT5G14180

Predicted

Phenotypic Enhancement

FSW = 0.1407

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT3G54230

Predicted

two hybrid

FSW = 0.0468

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT4G14716

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3478

Unknown

ATARD1 (ACIREDUCTONE DIOXYGENASE 1) ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING
AT2G26400

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.1341

Unknown

ATARD3 (ACIREDUCTONE DIOXYGENASE 3) ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ HETEROGLYCAN BINDING / METAL ION BINDING
AT5G43850

Predicted

Phylogenetic profile method

FSW = 0.4188

Unknown

ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454