Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G15370 - ( BARS1 (BARUOL SYNTHASE 1) baruol synthase/ catalytic )
18 Proteins interacs with AT4G15370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G07050 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7042
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT1G15520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexinterologs mapping | FSW = 0.3472
| Unknown | PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G47620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0077
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G13090 | Predictedsynthetic growth defect | FSW = 0.1894
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT2G29540 | PredictedSynthetic Rescue | FSW = 0.0302
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G10600 | Predictedtwo hybrid | FSW = 0.0293
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT2G31020 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0325
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT1G78970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3107
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78950 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.8125
| Unknown | BETA-AMYRIN SYNTHASE PUTATIVE |
AT5G42600 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5709
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT1G66960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6815
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT5G48010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4225
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G36150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8125
| Unknown | ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE |
AT1G78500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8125
| Unknown | PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE |
AT3G45130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8125
| Unknown | LAS1 LANOSTEROL SYNTHASE |
AT4G15340 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.8125
| Unknown | ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE |
AT1G78960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4848
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78955 | PredictedPhylogenetic profile method | FSW = 0.8125
| Unknown | CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454