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AT4G15780 - ( ATVAMP724 )

20 Proteins interacs with AT4G15780

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G33120	Predicted Phylogenetic profile method	FSW = 0.2545	Class C: plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G30920	Predicted in vivo	FSW = 0.0938	Class C: plasma membrane	CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN
AT4G32150	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6000	Class C: plasma membrane	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)
AT3G56190	Predicted in vitro	FSW = 0.1075	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT5G61210	Predicted Affinity Capture-MS two hybrid two hybrid in vitro in vitro in vivo in vivo in vitro in vitro in vitro in vitro two hybrid in vivo Affinity Capture-Western	FSW = 0.1905	Class C: plasma membrane	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT1G04760	Predicted Phylogenetic profile method Co-expression	FSW = 0.5246	Class C: plasma membrane	ATVAMP726
AT5G08080	Predicted two hybrid in vitro in vivo in vivo in vivo in vitro in vitro in vitro in vitro two hybrid two hybrid two hybrid in vivo in vivo in vivo in vitro two hybrid in vitro two hybrid Affinity Capture-Western	FSW = 0.2759	Class C: plasma membrane	SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR
AT5G54110	Predicted in vitro in vitro Affinity Capture-MS	FSW = 0.0832	Class C: plasma membrane	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) STRUCTURAL MOLECULE
AT1G04750	Predicted Phylogenetic profile method Co-expression	FSW = 0.0843	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G22360	Predicted Phylogenetic profile method Co-expression	FSW = 0.5400	Unknown	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)
AT5G42570	Predicted in vivo in vitro	FSW = 0.0395	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK)
AT2G25340	Predicted Phylogenetic profile method Co-expression	FSW = 0.4608	Unknown	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT4G04910	Predicted Phenotypic Enhancement	FSW = 0.0493	Unknown	NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G11150	Predicted Phylogenetic profile method Co-expression	FSW = 0.5630	Unknown	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT1G28490	Predicted in vitro in vivo in vivo in vitro Affinity Capture-MS	FSW = 0.1522	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G54300	Predicted Phylogenetic profile method Co-expression	FSW = 0.2571	Unknown	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT2G33110	Predicted Phylogenetic profile method	FSW = 0.2048	Unknown	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)
AT1G60780	Predicted two hybrid in vitro two hybrid Affinity Capture-MS Reconstituted Complex Affinity Capture-Western	FSW = 0.0170	Unknown	HAP13 (HAPLESS 13) PROTEIN BINDING
AT5G07110	Predicted in vitro two hybrid Affinity Capture-MS	FSW = 0.0409	Unknown	PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6)
AT5G67380	Predicted biochemical	FSW = 0.0045	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G15780 - ( ATVAMP724 )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite